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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14710 and RR42_RS14715 are separated by 106 nucleotides
RR42_RS14715 and RR42_RS14720 are separated by 1011 nucleotides
RR42_RS14720 and RR42_RS14725 are separated by 140 nucleotides
RR42_RS14725 and RR42_RS14730 are separated by 143 nucleotides
RR42_RS14710: RR42_RS14710 - tRNA-Arg, at 3,169,853 to 3,169,927
_RS14710
RR42_RS14715: RR42_RS14715 - hypothetical protein, at 3,170,034 to 3,170,429
_RS14715
RR42_RS14720: RR42_RS14720 - RNA helicase, at 3,171,441 to 3,173,381
_RS14720
RR42_RS14725: RR42_RS14725 - glycosyl transferase, at 3,173,522 to 3,174,781
_RS14725
RR42_RS14730: RR42_RS14730 - methyltransferase, at 3,174,925 to 3,176,025
_RS14730
Group
Condition
RR42
_RS14710
RR42
_RS14715
RR42
_RS14720
RR42
_RS14725
RR42
_RS14730
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-0.2
N.D.
-0.0
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-0.3
N.D.
-0.2
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.3
N.D.
+0.1
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
-0.1
N.D.
-0.2
+0.1
stress
R2A with sodium fluoride 100 mM
N.D.
-0.2
N.D.
-0.2
+0.1
stress
R2A with Lomefloxacin 0.001 mM
N.D.
+0.0
N.D.
+0.1
-0.3
carbon source
Suberic (C)
N.D.
-0.3
N.D.
+0.1
-0.1
lb
LB
N.D.
-0.4
N.D.
+0.2
+0.1
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-0.0
N.D.
+0.2
-0.2
carbon source
Octanoic (C)
N.D.
-0.2
N.D.
+0.3
-0.1
carbon source
Protocatechuic Acid (C)
N.D.
-0.1
N.D.
-0.1
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
-0.1
N.D.
+0.1
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
+0.4
N.D.
-0.1
-0.0
carbon source
propionate (C)
N.D.
-0.1
N.D.
+0.1
+0.3
stress
R2A with Chlorite 4 mM
N.D.
+0.3
N.D.
-0.1
+0.1
carbon source
L-Alanine (C)
N.D.
+0.2
N.D.
-0.1
+0.2
r2a
R2A
N.D.
+0.3
N.D.
-0.0
+0.1
stress
R2A with Cephalothin 0.25 mg/ml
N.D.
+0.4
N.D.
-0.1
+0.1
stress
R2A with Zinc 0.1 mM
N.D.
+0.3
N.D.
-0.2
+0.3
nitrogen source
D-Alanine (N)
N.D.
+0.1
N.D.
+0.1
+0.2
stress
R2A with Sisomicin 0.035 mg/ml
N.D.
+0.4
N.D.
+0.1
+0.0
nitrogen source
L-Citrulline (N)
N.D.
+0.2
N.D.
+0.0
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
+0.1
N.D.
+0.4
-0.1
nitrogen source
nitrate (N)
N.D.
+0.2
N.D.
+0.1
+0.2
carbon source
D-Lactate (C)
N.D.
+0.2
N.D.
+0.1
+0.2
nitrogen source
L-Valine (N)
N.D.
+0.3
N.D.
+0.1
+0.1
temperature
R2A 23C
N.D.
+0.2
N.D.
+0.3
+0.1
carbon source
D-Gluconic Acid (C)
N.D.
+0.4
N.D.
+0.1
+0.1
nitrogen source
casaminos (N)
N.D.
+0.2
N.D.
+0.0
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
+0.4
N.D.
+0.1
+0.2
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