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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14695 and RR42_RS14700 are separated by 8 nucleotides
RR42_RS14700 and RR42_RS14705 are separated by 316 nucleotides
RR42_RS14705 and RR42_RS14710 are separated by 77 nucleotides
RR42_RS14710 and RR42_RS14715 are separated by 106 nucleotides
RR42_RS14695: RR42_RS14695 - membrane protein, at 3,167,457 to 3,168,650
_RS14695
RR42_RS14700: RR42_RS14700 - hypothetical protein, at 3,168,659 to 3,169,126
_RS14700
RR42_RS14705: RR42_RS14705 - multidrug transporter, at 3,169,443 to 3,169,775
_RS14705
RR42_RS14710: RR42_RS14710 - tRNA-Arg, at 3,169,853 to 3,169,927
_RS14710
RR42_RS14715: RR42_RS14715 - hypothetical protein, at 3,170,034 to 3,170,429
_RS14715
Group
Condition
RR42
_RS14695
RR42
_RS14700
RR42
_RS14705
RR42
_RS14710
RR42
_RS14715
carbon source
Pimelic (C)
-0.2
-0.4
-0.4
N.D.
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.5
-0.4
N.D.
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-1.0
-0.3
N.D.
+0.2
stress
R2A with Bacitracin 0.5 mg/ml
-0.3
-0.6
-0.2
N.D.
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-0.5
-0.5
N.D.
+0.0
carbon source
Protocatechuic Acid (C)
+0.2
+0.1
-0.9
N.D.
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.8
+0.2
N.D.
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
-0.1
-0.4
N.D.
+0.2
carbon source
Heptanoic (C)
-0.2
+0.4
-0.5
N.D.
-0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
-0.7
-0.0
N.D.
+0.1
stress
R2A with A22 0.01 mg/ml
-0.2
+0.3
-0.5
N.D.
+0.1
lb
LB
-0.3
-0.2
+0.5
N.D.
-0.4
carbon source
Hexanoic (C)
-0.2
+0.5
-0.4
N.D.
-0.0
carbon source
Octanoic (C)
-0.1
+0.4
-0.3
N.D.
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-0.4
+0.4
N.D.
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.4
+0.8
N.D.
-0.2
carbon source
succinate (C)
-0.0
+0.5
-0.2
N.D.
-0.3
nitrogen source
L-Glutamine (N)
-0.2
-0.6
+0.7
N.D.
+0.0
nitrogen source
casaminos (N)
+0.1
-0.5
+0.2
N.D.
+0.2
nitrogen source
L-Serine (N)
-0.1
-0.4
+0.7
N.D.
+0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
-0.4
+0.5
N.D.
+0.1
stress
R2A with Cephalothin 0.25 mg/ml
-0.0
-0.1
+0.4
N.D.
+0.4
stress
R2A with Chlorite 4 mM
+0.1
+0.4
-0.1
N.D.
+0.3
nitrogen source
D-Alanine (N)
+0.1
+0.7
-0.1
N.D.
+0.1
carbon source
D-Lactate (C)
-0.1
+0.6
+0.2
N.D.
+0.2
carbon source
L-Alanine (C)
-0.1
+0.5
+0.4
N.D.
-0.0
carbon source
L-Alanine (C)
+0.0
+0.4
+0.3
N.D.
+0.2
carbon source
L-Glutamine (C)
+0.1
+0.5
+0.4
N.D.
+0.0
nitrogen source
L-Threonine (N)
+0.2
+0.5
+0.4
N.D.
+0.2
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
+0.3
+0.4
N.D.
+0.4
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