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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14630 and RR42_RS14635 are separated by 182 nucleotides
RR42_RS14635 and RR42_RS14640 are separated by 88 nucleotides
RR42_RS14640 and RR42_RS14645 are separated by 2 nucleotides
RR42_RS14645 and RR42_RS14650 are separated by 361 nucleotides
RR42_RS14630: RR42_RS14630 - MFS transporter, at 3,146,335 to 3,147,642
_RS14630
RR42_RS14635: RR42_RS14635 - proline-specific permease, at 3,147,825 to 3,149,225
_RS14635
RR42_RS14640: RR42_RS14640 - histidine ammonia-lyase, at 3,149,314 to 3,150,846
_RS14640
RR42_RS14645: RR42_RS14645 - urocanate hydratase, at 3,150,849 to 3,152,534
_RS14645
RR42_RS14650: RR42_RS14650 - multidrug ABC transporter ATP-binding protein, at 3,152,896 to 3,154,728
_RS14650
Group
Condition
RR42
_RS14630
RR42
_RS14635
RR42
_RS14640
RR42
_RS14645
RR42
_RS14650
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-0.0
-0.4
-0.5
-0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.0
-0.1
-0.4
-0.3
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
+0.0
-0.6
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.2
-0.8
+0.0
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
-0.2
-0.0
-0.4
-0.2
carbon source
L-Leucine (C)
+0.2
-0.0
-0.3
-0.3
-0.0
stress
R2A with Chloride 300 mM
+0.0
+0.1
-0.6
-0.2
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.1
-0.5
+0.0
+0.3
stress
R2A with Lomefloxacin 0.001 mM
-0.4
+0.4
+0.4
-0.5
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
-0.0
-0.1
-0.2
+0.3
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.0
+0.1
-0.6
-0.0
+0.3
carbon source
butyrate (C)
+0.2
-0.1
+0.1
-0.4
-0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.2
+0.2
-0.3
-0.2
+0.0
stress
R2A with nitrate 150 mM
+0.0
+0.2
-0.2
-0.4
+0.3
carbon source
adipate (C)
-0.0
+0.1
+0.4
-0.2
-0.4
carbon source
Disodium Glutarate (C)
+0.1
-0.0
+0.4
-0.3
-0.3
carbon source
Hexanoic (C)
-0.1
+0.1
-0.4
+0.3
+0.0
stress
R2A with A22 0.01 mg/ml
-0.0
+0.1
+0.5
-0.1
-0.1
carbon source
L-Lactate (C)
+0.1
+0.1
+0.4
-0.2
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-0.0
-0.1
+0.4
+0.2
stress
R2A with nitrate 200 mM
+0.2
+0.2
+0.3
-0.3
+0.2
carbon source
Azelaic (C)
+0.0
-0.1
+0.5
+0.2
-0.0
lb
LB
+0.2
+0.3
+0.7
-0.4
-0.1
stress
R2A with Cobalt chloride 0.3 mM
-0.1
+0.3
+0.1
+0.3
+0.2
temperature
R2A 23C
+0.1
+0.2
+0.3
+0.3
+0.1
carbon source
Heptanoic (C)
+0.0
+0.0
+0.5
+0.1
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
+0.4
+0.5
+0.0
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
+0.2
+0.9
-0.3
+0.0
carbon source
L-Histidine (C)
+0.1
+2.9
+2.2
+1.2
+0.1
carbon source
L-Histidine (C)
-0.2
+3.4
+2.5
+1.5
+0.2
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RR42_RS14640
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