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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14620 and RR42_RS14625 are separated by 5 nucleotides
RR42_RS14625 and RR42_RS14630 are separated by 14 nucleotides
RR42_RS14630 and RR42_RS14635 are separated by 182 nucleotides
RR42_RS14635 and RR42_RS14640 are separated by 88 nucleotides
RR42_RS14620: RR42_RS14620 - hypothetical protein, at 3,144,999 to 3,145,376
_RS14620
RR42_RS14625: RR42_RS14625 - formimidoylglutamase, at 3,145,382 to 3,146,320
_RS14625
RR42_RS14630: RR42_RS14630 - MFS transporter, at 3,146,335 to 3,147,642
_RS14630
RR42_RS14635: RR42_RS14635 - proline-specific permease, at 3,147,825 to 3,149,225
_RS14635
RR42_RS14640: RR42_RS14640 - histidine ammonia-lyase, at 3,149,314 to 3,150,846
_RS14640
Group
Condition
RR42
_RS14620
RR42
_RS14625
RR42
_RS14630
RR42
_RS14635
RR42
_RS14640
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-1.3
-0.1
-0.0
-0.4
carbon source
Protocatechuic Acid (C)
-0.5
-1.1
-0.0
-0.1
+0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.2
-1.0
-0.0
+0.1
-0.6
stress
R2A with nitrate 200 mM
-0.2
-0.7
-0.1
+0.1
-0.4
carbon source
succinate (C)
-0.3
-0.9
+0.1
-0.1
+0.1
nitrogen source
L-Valine (N)
+0.1
-1.1
+0.1
+0.1
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
-1.2
+0.0
-0.1
+0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
-0.9
+0.1
-0.0
-0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
-0.7
+0.2
+0.2
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.0
-1.0
+0.0
+0.1
+0.3
carbon source
Disodium Glutarate (C)
-0.6
+0.6
-0.0
-0.1
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.9
+0.4
+0.0
-0.2
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
-1.0
+0.2
+0.1
-0.1
carbon source
Hexanoic (C)
-0.5
+0.5
-0.1
+0.1
-0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-0.4
-0.4
+0.4
+0.4
stress
R2A with Zinc 0.1 mM
+0.3
-0.9
+0.2
+0.0
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.0
-0.1
+0.2
-0.8
carbon source
a-Ketoglutaric (C)
+0.2
-0.7
+0.1
-0.0
+0.4
carbon source
Hexanoic (C)
-0.7
+0.3
+0.3
-0.1
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
-1.0
+0.1
+0.4
+0.5
carbon source
L-Leucine (C)
+0.5
-0.4
+0.2
-0.0
-0.3
stress
R2A with copper (II) chloride 0.25 mM
+0.5
-0.5
+0.1
+0.2
-0.4
carbon source
Disodium Glutarate (C)
-0.7
+0.3
+0.1
-0.0
+0.4
carbon source
D,L-Lactate (C)
+0.4
-0.6
+0.2
-0.0
+0.2
carbon source
adipate (C)
-0.5
+0.5
-0.0
+0.1
+0.4
carbon source
Heptanoic (C)
-0.6
+0.5
+0.0
+0.0
+0.5
carbon source
Protocatechuic Acid (C)
-0.3
+0.3
+0.1
+0.2
+0.9
lb
LB
+0.3
+0.3
+0.2
+0.3
+0.7
carbon source
L-Histidine (C)
+0.1
-0.3
+0.1
+2.9
+2.2
carbon source
L-Histidine (C)
-0.4
-0.1
-0.2
+3.4
+2.5
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