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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14600 and RR42_RS14605 are separated by 35 nucleotides
RR42_RS14605 and RR42_RS14610 are separated by 388 nucleotides
RR42_RS14610 and RR42_RS14615 are separated by 93 nucleotides
RR42_RS14615 and RR42_RS14620 overlap by 7 nucleotides
RR42_RS14600: RR42_RS14600 - glutathione S-transferase, at 3,141,088 to 3,141,732
_RS14600
RR42_RS14605: RR42_RS14605 - threonine transporter, at 3,141,768 to 3,142,421
_RS14605
RR42_RS14610: RR42_RS14610 - lactate permease, at 3,142,810 to 3,144,486
_RS14610
RR42_RS14615: RR42_RS14615 - pirin, at 3,144,580 to 3,145,005
_RS14615
RR42_RS14620: RR42_RS14620 - hypothetical protein, at 3,144,999 to 3,145,376
_RS14620
Group
Condition
RR42
_RS14600
RR42
_RS14605
RR42
_RS14610
RR42
_RS14615
RR42
_RS14620
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-0.8
-0.3
-0.2
-0.3
lb
LB
-0.1
-0.1
-2.0
+0.2
+0.3
carbon source
Hexanoic (C)
+0.0
+0.2
-0.4
-0.4
-0.7
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.0
-0.4
-0.4
-0.4
carbon source
propionate (C)
+0.0
+0.2
-0.6
-0.3
-0.4
carbon source
Protocatechuic Acid (C)
-0.0
+0.2
-0.4
-0.3
-0.5
carbon source
Octanoic (C)
-0.3
+0.1
-0.2
-0.4
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
-0.1
+0.4
+0.0
-0.9
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
+0.2
-0.4
-0.2
+0.1
carbon source
succinate (C)
-0.1
+0.3
-0.4
-0.4
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.5
-0.1
+0.2
-0.1
-0.3
carbon source
Disodium Glutarate (C)
+0.0
+0.4
-0.4
-0.2
-0.6
carbon source
adipate (C)
-0.2
+0.3
+0.0
-0.3
-0.6
stress
R2A with Lomefloxacin 0.001 mM
+0.0
+0.2
-0.8
+0.2
-0.4
carbon source
Heptanoic (C)
+0.4
+0.1
-0.2
-0.4
-0.6
carbon source
propionate (C)
-0.3
+0.2
-0.5
-0.1
+0.2
carbon source
Suberic (C)
+0.2
+0.3
-0.4
-0.4
-0.2
carbon source
Disodium Glutarate (C)
+0.2
+0.2
+0.1
-0.1
-0.7
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.2
-0.6
-0.2
+0.1
carbon source
Heptanoic (C)
-0.1
+0.5
+0.0
-0.1
-0.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.1
-0.6
+0.1
+0.3
carbon source
D-Lactate (C)
-0.3
+0.2
-0.2
-0.1
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
+0.2
+0.4
-0.2
+0.2
stress
R2A with Chloride 300 mM
-0.3
+0.4
-0.2
+0.3
+0.1
carbon source
D,L-Lactate (C)
+0.1
+0.2
-0.5
-0.0
+0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
+0.4
-0.0
-0.4
+0.4
carbon source
Carbon source Phenylacetic 2.5 mM
-0.3
-0.1
+0.1
+0.4
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.2
-0.2
+0.3
+0.4
carbon source
pyruvate (C)
+0.2
+0.5
+0.3
-0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.1
+0.6
+0.3
+0.2
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