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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14465 and RR42_RS14470 are separated by 128 nucleotides
RR42_RS14470 and RR42_RS14475 are separated by 91 nucleotides
RR42_RS14475 and RR42_RS14480 are separated by 194 nucleotides
RR42_RS14480 and RR42_RS14485 are separated by 129 nucleotides
RR42_RS14465: RR42_RS14465 - malate dehydrogenase, at 3,110,311 to 3,111,294
_RS14465
RR42_RS14470: RR42_RS14470 - aldolase, at 3,111,423 to 3,112,403
_RS14470
RR42_RS14475: RR42_RS14475 - methylcitrate synthase, at 3,112,495 to 3,113,658
_RS14475
RR42_RS14480: RR42_RS14480 - hypothetical protein, at 3,113,853 to 3,114,389
_RS14480
RR42_RS14485: RR42_RS14485 - 2-methylcitrate dehydratase, at 3,114,519 to 3,115,970
_RS14485
Group
Condition
RR42
_RS14465
RR42
_RS14470
RR42
_RS14475
RR42
_RS14480
RR42
_RS14485
nitrogen source
Glycine (N)
N.D.
-0.1
N.D.
-3.0
+0.0
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
+0.4
N.D.
-3.3
+0.2
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-0.1
N.D.
-2.6
+0.0
stress
R2A with copper (II) chloride 0.25 mM
N.D.
-0.0
N.D.
-2.4
-0.0
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
-0.5
N.D.
-1.6
-0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
-0.7
N.D.
-1.2
-0.0
stress
R2A with nitrate 200 mM
N.D.
+0.1
N.D.
-1.8
-0.1
stress
R2A with Chloride 300 mM
N.D.
-0.6
N.D.
-0.8
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.4
N.D.
-0.9
+0.1
nitrogen source
casaminos (N)
N.D.
-0.8
N.D.
-0.2
-0.2
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
-0.0
N.D.
-1.1
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
-0.3
N.D.
-0.9
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
+0.8
N.D.
-1.8
-0.0
stress
R2A with nitrate 200 mM
N.D.
+0.3
N.D.
-1.0
+0.0
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
+0.6
N.D.
-1.2
-0.1
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
+0.7
N.D.
-1.1
-0.0
carbon source
Valeric (C)
N.D.
-0.9
N.D.
+0.7
+0.2
stress
R2A with Cobalt chloride 0.5 mM
N.D.
+0.7
N.D.
-0.3
-0.1
carbon source
Octanoic (C)
N.D.
-0.3
N.D.
+1.0
+0.1
carbon source
propionate (C)
N.D.
-0.3
N.D.
+0.8
+0.3
carbon source
Azelaic (C)
N.D.
-0.2
N.D.
+1.0
+0.0
carbon source
Pimelic (C)
N.D.
-0.3
N.D.
+0.9
+0.3
carbon source
Heptanoic (C)
N.D.
-0.4
N.D.
+1.1
+0.2
carbon source
adipate (C)
N.D.
+0.2
N.D.
+0.9
+0.2
carbon source
Octanoic (C)
N.D.
-0.2
N.D.
+1.3
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.3
N.D.
+1.0
+0.0
carbon source
Disodium Glutarate (C)
N.D.
+0.2
N.D.
+1.0
+0.3
lb
LB
N.D.
+1.0
N.D.
+0.5
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.1
N.D.
+1.7
+0.3
carbon source
Protocatechuic Acid (C)
N.D.
+0.3
N.D.
+1.8
+0.1
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