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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14235 and RR42_RS14240 are separated by 75 nucleotides
RR42_RS14240 and RR42_RS14245 are separated by 201 nucleotides
RR42_RS14245 and RR42_RS14250 are separated by 95 nucleotides
RR42_RS14250 and RR42_RS14255 are separated by 94 nucleotides
RR42_RS14235: RR42_RS14235 - hypothetical protein, at 3,061,412 to 3,061,693
_RS14235
RR42_RS14240: RR42_RS14240 - elongation factor G, at 3,061,769 to 3,063,877
_RS14240
RR42_RS14245: RR42_RS14245 - hypothetical protein, at 3,064,079 to 3,064,330
_RS14245
RR42_RS14250: RR42_RS14250 - epimerase, at 3,064,426 to 3,065,538
_RS14250
RR42_RS14255: RR42_RS14255 - structural protein MipA, at 3,065,633 to 3,066,376
_RS14255
Group
Condition
RR42
_RS14235
RR42
_RS14240
RR42
_RS14245
RR42
_RS14250
RR42
_RS14255
carbon source
Dodecandioic (C)
-1.4
-0.0
N.D.
-0.2
-0.3
carbon source
L-Malic (C)
-1.7
-0.1
N.D.
-0.1
+0.1
carbon source
L-Threonine (C)
-1.4
+0.0
N.D.
-0.0
-0.1
carbon source
Pimelic (C)
-1.0
-0.1
N.D.
-0.2
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.2
+0.3
N.D.
-0.4
-0.1
carbon source
L-Glutamine (C)
-0.6
-0.1
N.D.
-0.1
-0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.8
-0.2
N.D.
-0.1
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-1.0
+0.0
N.D.
+0.0
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
-1.2
+0.1
N.D.
-0.0
+0.0
carbon source
a-Ketoglutaric (C)
-0.9
-0.1
N.D.
-0.1
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-1.0
-0.0
N.D.
+0.1
-0.0
carbon source
adipate (C)
-0.9
+0.2
N.D.
-0.3
-0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.4
+0.0
N.D.
-0.7
-0.7
stress
R2A with Chlorite 4 mM
-0.8
+0.1
N.D.
-0.1
-0.2
carbon source
Hexanoic (C)
-1.0
+0.1
N.D.
-0.1
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
-1.0
-0.1
N.D.
+0.2
+0.0
carbon source
Protocatechuic Acid (C)
-1.1
+0.1
N.D.
+0.2
+0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
-0.4
N.D.
-0.0
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
-1.1
+0.2
N.D.
+0.1
+0.1
carbon source
Octanoic (C)
-0.8
+0.1
N.D.
-0.1
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.8
-0.0
N.D.
-0.2
+0.5
carbon source
Protocatechuic Acid (C)
-0.4
+0.3
N.D.
-0.2
-0.2
stress
R2A with Bacitracin 0.5 mg/ml
-0.5
+0.2
N.D.
+0.2
+0.3
nitrogen source
L-Glutamine (N)
+1.1
-0.1
N.D.
-0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.8
-0.3
N.D.
+0.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.8
+0.1
N.D.
-0.2
+0.2
carbon source
succinate (C)
+0.9
-0.2
N.D.
-0.1
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.9
-0.0
N.D.
+0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.1
-0.1
N.D.
+0.1
-0.1
nitrogen source
L-Isoleucine (N)
+0.7
+0.1
N.D.
+0.2
+0.2
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