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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14195 and RR42_RS14200 are separated by 177 nucleotides
RR42_RS14200 and RR42_RS14205 are separated by 82 nucleotides
RR42_RS14205 and RR42_RS14210 are separated by 89 nucleotides
RR42_RS14210 and RR42_RS14215 are separated by 353 nucleotides
RR42_RS14195: RR42_RS14195 - sodium:proton antiporter, at 3,053,828 to 3,055,270
_RS14195
RR42_RS14200: RR42_RS14200 - membrane protein, at 3,055,448 to 3,056,134
_RS14200
RR42_RS14205: RR42_RS14205 - nicotinate phosphoribosyltransferase, at 3,056,217 to 3,057,395
_RS14205
RR42_RS14210: RR42_RS14210 - hypothetical protein, at 3,057,485 to 3,058,018
_RS14210
RR42_RS14215: RR42_RS14215 - ferredoxin, at 3,058,372 to 3,058,695
_RS14215
Group
Condition
RR42
_RS14195
RR42
_RS14200
RR42
_RS14205
RR42
_RS14210
RR42
_RS14215
carbon source
D-Gluconic Acid (C)
N.D.
-0.9
-0.3
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-0.9
-0.1
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-0.5
-0.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
-0.6
-0.3
N.D.
N.D.
nitrogen source
nitrite (N)
N.D.
+0.1
-1.0
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.4
-0.4
N.D.
N.D.
nitrogen source
L-Threonine (N)
N.D.
-0.6
-0.2
N.D.
N.D.
carbon source
L-Asparagine (C)
N.D.
-0.7
-0.1
N.D.
N.D.
carbon source
L-Proline (C)
N.D.
-0.6
-0.1
N.D.
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
N.D.
-0.7
+0.0
N.D.
N.D.
carbon source
L-Alanine (C)
N.D.
-0.4
-0.2
N.D.
N.D.
carbon source
Ethanol (C)
N.D.
-0.6
-0.0
N.D.
N.D.
nitrogen source
L-Lysine (N)
N.D.
-0.6
-0.0
N.D.
N.D.
nitrogen source
L-Asparagine (N)
N.D.
-0.5
-0.1
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-0.5
-0.1
N.D.
N.D.
carbon source
adipate (C)
N.D.
-0.8
+0.3
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-0.6
+0.2
N.D.
N.D.
nitrogen source
D-Alanine (N)
N.D.
-0.4
+0.1
N.D.
N.D.
carbon source
Disodium Glutarate (C)
N.D.
-0.5
+0.1
N.D.
N.D.
carbon source
butyrate (C)
N.D.
-0.4
+0.1
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.5
+0.2
N.D.
N.D.
carbon source
Pimelic (C)
N.D.
-0.4
+0.1
N.D.
N.D.
carbon source
L-Lactate (C)
N.D.
-0.4
+0.1
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
-0.3
+0.2
N.D.
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
-0.2
+0.3
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
+0.5
+0.0
N.D.
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
+0.4
+0.2
N.D.
N.D.
carbon source
Octanoic (C)
N.D.
+0.4
+0.2
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
+0.7
-0.0
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
N.D.
+0.5
+0.5
N.D.
N.D.
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