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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14070 and RR42_RS14075 are separated by 8 nucleotides
RR42_RS14075 and RR42_RS14080 are separated by 134 nucleotides
RR42_RS14080 and RR42_RS14085 are separated by 129 nucleotides
RR42_RS14085 and RR42_RS14090 are separated by 64 nucleotides
RR42_RS14070: RR42_RS14070 - sugar dehydratase, at 3,028,516 to 3,029,589
_RS14070
RR42_RS14075: RR42_RS14075 - anti-sigma factor, at 3,029,598 to 3,030,227
_RS14075
RR42_RS14080: RR42_RS14080 - RNA polymerase sigma factor RpoE, at 3,030,362 to 3,030,961
_RS14080
RR42_RS14085: RR42_RS14085 - hypothetical protein, at 3,031,091 to 3,031,546
_RS14085
RR42_RS14090: RR42_RS14090 - 3-oxoacyl-ACP synthase, at 3,031,611 to 3,032,843
_RS14090
Group
Condition
RR42
_RS14070
RR42
_RS14075
RR42
_RS14080
RR42
_RS14085
RR42
_RS14090
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-1.4
-1.2
-3.7
+1.0
N.D.
stress
R2A with Chloride 300 mM
-0.0
-0.2
-3.2
-1.1
N.D.
carbon source
Heptanoic (C)
-0.7
-1.5
-0.9
-0.7
N.D.
carbon source
propionate (C)
-0.3
-0.9
-2.5
-0.1
N.D.
stress
R2A with Chloride 300 mM
+0.1
-0.2
-2.9
-0.6
N.D.
stress
R2A with sodium fluoride 100 mM
-0.6
-0.3
-2.1
-0.5
N.D.
stress
R2A with nitrate 200 mM
-0.3
-0.4
-2.3
-0.5
N.D.
carbon source
Dodecandioic (C)
-1.4
-2.0
+0.2
-0.3
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-1.0
-1.3
-0.8
+0.0
N.D.
stress
R2A with nitrate 150 mM
+0.5
+0.4
-3.4
-0.5
N.D.
carbon source
Dodecandioic (C)
-1.4
-2.0
+0.4
+0.2
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
+0.3
+0.3
-2.4
-0.6
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.5
-1.7
+0.2
+0.7
N.D.
lb
LB
+0.8
+0.4
-2.3
-0.9
N.D.
stress
R2A with nitrate 200 mM
+0.4
+0.4
-2.7
-0.2
N.D.
carbon source
Protocatechuic Acid (C)
-1.7
-1.6
+1.6
-0.2
N.D.
carbon source
Protocatechuic Acid (C)
-1.6
-2.1
+1.6
+0.4
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+1.0
+1.1
-3.5
+0.0
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
+0.5
+0.8
-2.1
-0.1
N.D.
carbon source
Pimelic (C)
+0.6
+0.8
-1.7
-0.1
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+1.7
+1.8
-3.1
-0.4
N.D.
stress
R2A with Zinc 0.1 mM
+0.9
+1.1
-1.9
+0.3
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
+1.4
+1.4
-0.9
-0.1
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+2.3
+2.4
-2.1
-0.6
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+2.6
+2.5
-2.0
-0.7
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+2.3
+2.4
-1.7
-0.1
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+3.1
+3.5
-3.0
+0.1
N.D.
carbon source
adipate (C)
+3.2
+3.1
-2.3
+0.3
N.D.
carbon source
adipate (C)
+3.3
+3.1
-2.3
+0.2
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+4.2
+4.0
-2.0
+0.1
N.D.
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