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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS14020 and RR42_RS14025 overlap by 4 nucleotides
RR42_RS14025 and RR42_RS14030 are separated by 30 nucleotides
RR42_RS14030 and RR42_RS14035 overlap by 8 nucleotides
RR42_RS14035 and RR42_RS14040 overlap by 4 nucleotides
RR42_RS14020: RR42_RS14020 - 4'-phosphopantetheinyl transferase, at 3,019,207 to 3,019,650
_RS14020
RR42_RS14025: RR42_RS14025 - pyridoxine 5'-phosphate synthase, at 3,019,647 to 3,020,429
_RS14025
RR42_RS14030: RR42_RS14030 - DNA recombination protein RecO, at 3,020,460 to 3,021,338
_RS14030
RR42_RS14035: RR42_RS14035 - GTPase Era, at 3,021,331 to 3,022,266
_RS14035
RR42_RS14040: RR42_RS14040 - ribonuclease III, at 3,022,263 to 3,023,033
_RS14040
Group
Condition
RR42
_RS14020
RR42
_RS14025
RR42
_RS14030
RR42
_RS14035
RR42
_RS14040
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
N.D.
-6.2
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
N.D.
-4.2
N.D.
N.D.
carbon source
L-Histidine (C)
N.D.
N.D.
-1.9
N.D.
N.D.
carbon source
L-Histidine (C)
N.D.
N.D.
-1.4
N.D.
N.D.
lb
LB
N.D.
N.D.
-1.4
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
N.D.
-1.1
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
-1.0
N.D.
N.D.
nitrogen source
L-Threonine (N)
N.D.
N.D.
-0.9
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
N.D.
-0.9
N.D.
N.D.
carbon source
succinate (C)
N.D.
N.D.
-0.8
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
N.D.
N.D.
-0.8
N.D.
N.D.
nitrogen source
L-Leucine (N)
N.D.
N.D.
-0.8
N.D.
N.D.
carbon source
Hexanoic (C)
N.D.
N.D.
-0.7
N.D.
N.D.
carbon source
propionate (C)
N.D.
N.D.
-0.7
N.D.
N.D.
carbon source
L-Leucine (C)
N.D.
N.D.
-0.6
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
N.D.
-0.6
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
N.D.
-0.6
N.D.
N.D.
nitrogen source
L-Lysine (N)
N.D.
N.D.
-0.6
N.D.
N.D.
carbon source
Dodecandioic (C)
N.D.
N.D.
-0.6
N.D.
N.D.
stress
R2A with nitrate 150 mM
N.D.
N.D.
-0.6
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
N.D.
-0.6
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
N.D.
-0.6
N.D.
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
N.D.
-0.6
N.D.
N.D.
temperature
R2A 23C
N.D.
N.D.
-0.5
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
-0.5
N.D.
N.D.
carbon source
propionate (C)
N.D.
N.D.
-0.5
N.D.
N.D.
stress
R2A with Zinc 0.1 mM
N.D.
N.D.
-0.5
N.D.
N.D.
carbon source
L-Lactate (C)
N.D.
N.D.
-0.5
N.D.
N.D.
carbon source
D-Lactate (C)
N.D.
N.D.
-0.5
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
N.D.
N.D.
+0.7
N.D.
N.D.
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