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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13965 and RR42_RS13970 are separated by 39 nucleotides
RR42_RS13970 and RR42_RS13975 are separated by 398 nucleotides
RR42_RS13975 and RR42_RS13980 are separated by 437 nucleotides
RR42_RS13980 and RR42_RS13985 are separated by 104 nucleotides
RR42_RS13965: RR42_RS13965 - LysR family transcriptional regulator, at 3,008,091 to 3,008,996
_RS13965
RR42_RS13970: RR42_RS13970 - hypothetical protein, at 3,009,036 to 3,010,262
_RS13970
RR42_RS13975: RR42_RS13975 - chemotaxis protein, at 3,010,661 to 3,012,205
_RS13975
RR42_RS13980: RR42_RS13980 - tRNA-Cys, at 3,012,643 to 3,012,716
_RS13980
RR42_RS13985: RR42_RS13985 - tRNA-Gly, at 3,012,821 to 3,012,896
_RS13985
Group
Condition
RR42
_RS13965
RR42
_RS13970
RR42
_RS13975
RR42
_RS13980
RR42
_RS13985
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.1
-0.0
-0.1
N.D.
N.D.
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.7
-0.3
+0.1
N.D.
N.D.
carbon source
Octanoic (C)
-0.1
-0.6
-0.1
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-0.8
+0.5
-0.4
N.D.
N.D.
carbon source
adipate (C)
-0.5
-0.1
-0.2
N.D.
N.D.
carbon source
Octanoic (C)
-0.1
-0.5
-0.0
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.2
-0.5
+0.2
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.1
-0.4
+0.2
N.D.
N.D.
carbon source
L-Histidine (C)
+0.2
-0.1
-0.4
N.D.
N.D.
carbon source
Pimelic (C)
+0.2
-0.3
-0.2
N.D.
N.D.
carbon source
pyruvate (C)
-0.1
-0.4
+0.2
N.D.
N.D.
carbon source
Azelaic (C)
+0.2
-0.4
-0.1
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.3
-0.1
N.D.
N.D.
r2a
R2A
-0.5
+0.1
+0.1
N.D.
N.D.
stress
R2A with sodium fluoride 100 mM
-0.4
+0.2
+0.2
N.D.
N.D.
carbon source
Pimelic (C)
+0.4
-0.2
-0.1
N.D.
N.D.
carbon source
succinate (C)
+0.4
+0.1
-0.2
N.D.
N.D.
nitrogen source
L-Phenylalanine (N)
+0.2
-0.2
+0.3
N.D.
N.D.
carbon source
L-Leucine (C)
+0.2
+0.3
-0.2
N.D.
N.D.
carbon source
Disodium Glutarate (C)
+0.4
+0.1
-0.2
N.D.
N.D.
carbon source
D,L-Lactate (C)
+0.4
-0.1
+0.1
N.D.
N.D.
nitrogen source
D-Alanine (N)
+0.4
+0.2
-0.0
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.5
-0.1
N.D.
N.D.
carbon source
Valeric (C)
+0.5
+0.1
-0.0
N.D.
N.D.
carbon source
D,L-Lactate (C)
+0.2
+0.6
-0.1
N.D.
N.D.
nitrogen source
L-Valine (N)
+0.4
+0.3
+0.0
N.D.
N.D.
nitrogen source
Glycine (N)
+0.2
+0.4
+0.3
N.D.
N.D.
nitrogen source
nitrate (N)
+0.2
+0.5
+0.2
N.D.
N.D.
nitrogen source
casaminos (N)
+0.3
+0.3
+0.2
N.D.
N.D.
nitrogen source
Glucuronamide (N)
+0.7
+0.2
+0.2
N.D.
N.D.
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