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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13825 and RR42_RS13830 are separated by 362 nucleotides
RR42_RS13830 and RR42_RS13835 are separated by 127 nucleotides
RR42_RS13835 and RR42_RS13840 are separated by 181 nucleotides
RR42_RS13840 and RR42_RS13845 are separated by 102 nucleotides
RR42_RS13825: RR42_RS13825 - hypothetical protein, at 2,983,149 to 2,983,535
_RS13825
RR42_RS13830: RR42_RS13830 - hypothetical protein, at 2,983,898 to 2,984,182
_RS13830
RR42_RS13835: RR42_RS13835 - hypothetical protein, at 2,984,310 to 2,984,537
_RS13835
RR42_RS13840: RR42_RS13840 - serine hydrolase, at 2,984,719 to 2,986,011
_RS13840
RR42_RS13845: RR42_RS13845 - hypothetical protein, at 2,986,114 to 2,986,398
_RS13845
Group
Condition
RR42
_RS13825
RR42
_RS13830
RR42
_RS13835
RR42
_RS13840
RR42
_RS13845
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-1.3
-0.4
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.6
-0.8
-0.0
-0.8
carbon source
adipate (C)
-0.7
-0.7
-0.5
-0.0
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-1.1
-0.9
+0.2
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
-0.2
-1.1
-0.1
+0.3
nitrogen source
L-Threonine (N)
+0.2
-1.2
-0.3
-0.0
-0.3
stress
R2A with Chlorite 4 mM
+0.2
-1.2
-0.5
+0.0
+0.1
stress
R2A with sodium fluoride 100 mM
+0.3
-1.0
-0.7
-0.2
+0.2
carbon source
Suberic (C)
-0.7
+0.0
-0.9
+0.3
-0.1
nitrogen source
L-Glutamine (N)
-0.6
-1.0
+0.2
+0.0
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
-1.2
+0.4
-0.2
+0.0
r2a
R2A
-0.3
+0.7
-1.0
-0.1
+0.2
carbon source
Protocatechuic Acid (C)
+0.2
-0.3
-1.0
+0.2
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.8
+0.5
-0.2
-0.4
carbon source
L-Leucine (C)
+0.2
-0.8
+0.4
+0.2
-0.3
temperature
R2A 37C
-0.5
+0.9
-0.2
-0.3
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
-0.6
+0.9
+0.0
+0.5
stress
R2A with Cobalt chloride 0.3 mM
-0.1
+1.3
+0.1
-0.4
-0.3
nitrogen source
L-Isoleucine (N)
+0.4
+0.5
-0.7
+0.1
+0.4
nitrogen source
D-Alanine (N)
+0.5
+0.8
-0.2
-0.0
-0.3
nitrogen source
L-Isoleucine (N)
+0.5
+0.9
+0.4
+0.0
-0.2
carbon source
L-Glutamine (C)
-0.1
+1.1
+0.3
-0.1
+0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
+1.2
+0.2
-0.2
+0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.5
+1.6
-0.3
-0.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+1.3
+0.0
+0.1
-0.1
+0.5
stress
R2A with Cobalt chloride 0.5 mM
+0.0
+1.0
+0.7
-0.1
+0.2
carbon source
L-Threonine (C)
+0.3
+1.0
+0.5
+0.0
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
+0.9
+0.8
-0.0
+0.6
stress
R2A with Zinc 0.1 mM
+0.6
+1.1
+0.2
+0.0
+0.4
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
+1.2
+0.4
-0.2
+0.6
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RR42_RS13835
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RR42_RS13845
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