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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13450 and RR42_RS13455 are separated by 55 nucleotides
RR42_RS13455 and RR42_RS13460 are separated by 53 nucleotides
RR42_RS13460 and RR42_RS13465 overlap by 4 nucleotides
RR42_RS13465 and RR42_RS13470 are separated by 246 nucleotides
RR42_RS13450: RR42_RS13450 - PhoU family transcriptional regulator, at 2,902,252 to 2,902,956
_RS13450
RR42_RS13455: RR42_RS13455 - phosphate ABC transporter ATP-binding protein, at 2,903,012 to 2,903,800
_RS13455
RR42_RS13460: RR42_RS13460 - phosphate transporter permease subunit PtsA, at 2,903,854 to 2,904,756
_RS13460
RR42_RS13465: RR42_RS13465 - phosphate transporter permease subunit PstC, at 2,904,753 to 2,905,718
_RS13465
RR42_RS13470: RR42_RS13470 - phosphate ABC transporter substrate-binding protein, at 2,905,965 to 2,906,999
_RS13470
Group
Condition
RR42
_RS13450
RR42
_RS13455
RR42
_RS13460
RR42
_RS13465
RR42
_RS13470
stress
R2A with Cobalt chloride 0.5 mM
-0.5
-0.4
-0.1
-3.5
-0.4
stress
R2A with Nickel (II) chloride 0.25 mM
-0.3
-0.6
-0.9
-1.3
-0.9
stress
R2A with Bacitracin 0.5 mg/ml
-0.3
-0.7
-1.2
-1.0
-0.9
stress
R2A with Cobalt chloride 0.3 mM
-0.0
-0.6
-0.7
-1.7
-0.7
r2a
R2A
+0.3
-1.2
-0.6
-0.9
-0.9
r2a
R2A
+0.4
-0.5
-0.6
-1.7
-0.3
stress
R2A with Cephalothin 0.25 mg/ml
+0.2
-0.8
-0.8
-0.4
-0.6
carbon source
L-Asparagine (C)
-0.2
-0.6
-0.2
-0.8
-0.5
r2a
R2A
+0.6
-0.5
-1.3
-0.7
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.2
-0.3
-1.1
-0.4
carbon source
a-Ketoglutaric (C)
-0.1
-0.3
-0.5
-1.1
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-1.2
-0.4
-0.7
+0.2
+0.2
stress
R2A with sodium fluoride 100 mM
+0.6
-0.5
-0.5
-1.2
-0.2
nitrogen source
L-Lysine (N)
-0.0
-0.3
-0.5
-1.0
+0.3
carbon source
succinate (C)
-0.2
-0.3
+0.4
-1.3
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.3
-0.9
+0.3
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
-0.4
+0.3
-1.0
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.0
-0.6
-0.7
+0.8
carbon source
Suberic (C)
-0.3
+0.5
-0.6
-0.3
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.2
-0.2
-0.5
-0.5
-0.1
carbon source
Valeric (C)
-0.3
+1.0
+0.6
+0.4
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.2
+0.4
-0.1
+0.5
+0.9
carbon source
Protocatechuic Acid (C)
+0.8
+0.9
+0.1
+0.5
-0.1
carbon source
Pimelic (C)
+0.2
+0.9
+0.3
+0.4
+0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.6
+0.4
+0.6
+0.9
+1.0
stress
R2A with Lomefloxacin 0.00075 mM
+0.6
-0.4
+0.2
+1.3
+0.7
carbon source
adipate (C)
+0.3
+0.8
+0.2
+0.8
+0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.6
-0.2
+0.4
+1.0
+0.6
carbon source
adipate (C)
+0.6
+0.2
+0.2
+1.0
+0.6
carbon source
Disodium Glutarate (C)
+0.3
+0.7
-0.1
+1.2
+0.4
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