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Gene
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Cofit
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13400 and RR42_RS13405 are separated by 140 nucleotides
RR42_RS13405 and RR42_RS13410 are separated by 395 nucleotides
RR42_RS13410 and RR42_RS13415 are separated by 752 nucleotides
RR42_RS13415 and RR42_RS13420 are separated by 415 nucleotides
RR42_RS13400: RR42_RS13400 - tRNA-Arg, at 2,891,340 to 2,891,416
_RS13400
RR42_RS13405: RR42_RS13405 - diguanylate cyclase, at 2,891,557 to 2,892,774
_RS13405
RR42_RS13410: RR42_RS13410 - tRNA-Pro, at 2,893,170 to 2,893,246
_RS13410
RR42_RS13415: RR42_RS13415 - translation initiation factor IF-1, at 2,893,999 to 2,894,220
_RS13415
RR42_RS13420: RR42_RS13420 - phosphohistidine phosphatase, at 2,894,636 to 2,895,112
_RS13420
Group
Condition
RR42
_RS13400
RR42
_RS13405
RR42
_RS13410
RR42
_RS13415
RR42
_RS13420
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-0.0
N.D.
N.D.
-1.8
lb
LB
N.D.
-0.2
N.D.
N.D.
-1.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
-0.2
N.D.
N.D.
-1.3
nitrogen source
L-Glutamine (N)
N.D.
+0.1
N.D.
N.D.
-1.2
carbon source
Protocatechuic Acid (C)
N.D.
-0.0
N.D.
N.D.
-0.8
carbon source
Ethanol (C)
N.D.
+0.1
N.D.
N.D.
-0.8
carbon source
pyruvate (C)
N.D.
+0.1
N.D.
N.D.
-0.8
nitrogen source
Glucuronamide (N)
N.D.
+0.1
N.D.
N.D.
-0.7
stress
R2A with Thallium(I) acetate 0.001 mg/ml
N.D.
+0.1
N.D.
N.D.
-0.7
nitrogen source
L-Valine (N)
N.D.
+0.1
N.D.
N.D.
-0.6
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
+0.3
N.D.
N.D.
-0.5
nitrogen source
L-Phenylalanine (N)
N.D.
+0.4
N.D.
N.D.
-0.4
carbon source
adipate (C)
N.D.
+0.5
N.D.
N.D.
-0.3
carbon source
Octanoic (C)
N.D.
+0.5
N.D.
N.D.
-0.3
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
-0.2
N.D.
N.D.
+0.8
stress
R2A with A22 0.01 mg/ml
N.D.
+0.9
N.D.
N.D.
-0.2
carbon source
L-Asparagine (C)
N.D.
-0.1
N.D.
N.D.
+0.8
nitrogen source
L-Tryptophan (N)
N.D.
+0.1
N.D.
N.D.
+0.6
nitrogen source
L-Threonine (N)
N.D.
-0.1
N.D.
N.D.
+0.8
carbon source
L-Alanine (C)
N.D.
-0.0
N.D.
N.D.
+0.8
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.0
N.D.
N.D.
+0.7
carbon source
propionate (C)
N.D.
+0.1
N.D.
N.D.
+0.7
carbon source
L-Tryptophan (C)
N.D.
+0.2
N.D.
N.D.
+0.7
nitrogen source
D-Alanine (N)
N.D.
+0.2
N.D.
N.D.
+0.7
carbon source
a-Ketoglutaric (C)
N.D.
+0.1
N.D.
N.D.
+0.8
carbon source
L-Glutamine (C)
N.D.
+0.2
N.D.
N.D.
+0.7
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
+0.1
N.D.
N.D.
+0.8
nitrogen source
L-Leucine (N)
N.D.
+0.1
N.D.
N.D.
+0.9
carbon source
L-Alanine (C)
N.D.
+0.1
N.D.
N.D.
+0.9
carbon source
L-Proline (C)
N.D.
+0.3
N.D.
N.D.
+0.9
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