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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13365 and RR42_RS13370 are separated by 358 nucleotides
RR42_RS13370 and RR42_RS13375 are separated by 59 nucleotides
RR42_RS13375 and RR42_RS13380 overlap by 4 nucleotides
RR42_RS13380 and RR42_RS13385 are separated by 18 nucleotides
RR42_RS13365: RR42_RS13365 - peptidase P60, at 2,882,373 to 2,883,059
_RS13365
RR42_RS13370: RR42_RS13370 - microcin ABC transporter ATP-binding protein, at 2,883,418 to 2,885,028
_RS13370
RR42_RS13375: RR42_RS13375 - peptide ABC transporter permease, at 2,885,088 to 2,886,215
_RS13375
RR42_RS13380: RR42_RS13380 - microcin ABC transporter permease, at 2,886,212 to 2,887,264
_RS13380
RR42_RS13385: RR42_RS13385 - peptide ABC transporter substrate-binding protein, at 2,887,283 to 2,889,163
_RS13385
Group
Condition
RR42
_RS13365
RR42
_RS13370
RR42
_RS13375
RR42
_RS13380
RR42
_RS13385
stress
R2A with Nickel (II) chloride 0.25 mM
-3.7
-0.6
-0.4
-0.5
-0.4
stress
R2A with Chloride 300 mM
-1.5
-0.8
-0.3
-0.6
-0.6
stress
R2A with Bacitracin 0.5 mg/ml
-1.0
-1.0
-0.4
-0.4
-0.6
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.6
-0.5
-1.1
-0.7
-0.4
stress
R2A with nitrate 200 mM
-1.9
-0.4
-0.4
-0.3
-0.2
stress
R2A with nitrate 150 mM
-2.3
-0.1
-0.3
-0.2
-0.1
stress
R2A with Chloride 300 mM
-2.0
-0.1
-0.2
-0.5
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
-1.7
-0.2
-0.2
-0.3
-0.5
r2a
R2A
-1.4
-0.6
-0.0
-0.1
-0.6
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.8
-0.8
-0.1
-0.4
-0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.8
-0.5
+0.3
-1.1
-0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-1.5
+0.5
+0.7
+0.4
+0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+2.7
-0.6
-0.5
-0.7
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-2.1
+1.1
+0.9
+0.4
+0.7
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.3
+0.7
+0.7
+0.5
+0.5
stress
R2A with Nickel (II) chloride 0.25 mM
-0.6
+0.6
+0.5
+0.5
+0.3
stress
R2A with Cobalt chloride 0.5 mM
-1.8
+0.8
+0.9
+0.9
+1.1
stress
R2A with Cobalt chloride 0.3 mM
-1.3
+0.4
+1.1
+1.2
+1.1
stress
R2A with Nickel (II) chloride 0.35 mM
-1.1
+1.2
+0.8
+0.9
+0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.5
+0.1
+0.1
+0.7
+0.2
carbon source
adipate (C)
+0.1
-0.2
+1.1
+1.0
+0.7
carbon source
Dodecandioic (C)
+0.1
+0.3
+0.8
+1.0
+0.6
carbon source
adipate (C)
-0.1
+0.5
+1.0
+0.9
+0.5
carbon source
Dodecandioic (C)
+0.5
+0.5
+0.8
+0.9
+0.5
stress
R2A with Zinc 0.1 mM
-0.0
+1.1
+0.8
+0.9
+0.8
stress
R2A with D-Cycloserine 0.5 mg/ml
+2.5
+0.1
+0.4
+0.2
+0.5
stress
R2A with Lomefloxacin 0.001 mM
+4.5
-0.3
-0.0
+0.1
+0.1
carbon source
Protocatechuic Acid (C)
-2.0
+1.5
+1.9
+1.8
+1.6
lb
LB
+2.0
+0.7
+0.8
+0.5
+1.0
carbon source
Protocatechuic Acid (C)
+0.9
+2.1
+2.3
+2.2
+2.1
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RR42_RS13375
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