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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13240 and RR42_RS13245 are separated by 194 nucleotides
RR42_RS13245 and RR42_RS13250 are separated by 233 nucleotides
RR42_RS13250 and RR42_RS13255 are separated by 221 nucleotides
RR42_RS13255 and RR42_RS13260 overlap by 4 nucleotides
RR42_RS13240: RR42_RS13240 - mannosyltransferase, at 2,851,261 to 2,852,073
_RS13240
RR42_RS13245: RR42_RS13245 - ABC transporter substrate-binding protein, at 2,852,268 to 2,853,314
_RS13245
RR42_RS13250: RR42_RS13250 - LacI family transcriptional regulator, at 2,853,548 to 2,854,498
_RS13250
RR42_RS13255: RR42_RS13255 - hydroxymethylglutaryl-CoA lyase, at 2,854,720 to 2,855,688
_RS13255
RR42_RS13260: RR42_RS13260 - CoA-transferase, at 2,855,685 to 2,856,881
_RS13260
Group
Condition
RR42
_RS13240
RR42
_RS13245
RR42
_RS13250
RR42
_RS13255
RR42
_RS13260
stress
R2A with nitrate 200 mM
-0.7
-0.5
-0.6
-0.8
-0.6
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.9
-0.6
-0.6
-0.5
-0.5
temperature
R2A 23C
-0.9
-0.5
-0.9
-0.1
-0.5
nitrogen source
casaminos (N)
-0.3
-0.7
-0.7
-1.2
+0.0
carbon source
D,L-Lactate (C)
-0.6
-0.5
-0.4
-0.1
-0.9
temperature
R2A 23C
-0.9
-0.5
-0.5
-0.5
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.7
-0.4
-0.4
-0.4
-0.3
r2a
R2A
-0.7
-0.3
-0.3
-0.3
-0.5
stress
R2A with Zinc 0.1 mM
-0.5
-0.5
-0.6
+0.2
-0.7
nitrogen source
Glucuronamide (N)
-0.4
-0.8
-0.7
+0.1
+0.1
r2a
R2A
-0.7
-0.2
-0.1
-0.3
-0.3
nitrogen source
L-Serine (N)
-0.6
-0.5
-0.1
-0.6
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.2
+0.4
+0.4
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.0
+0.7
+0.5
+0.5
r2a
R2A
+0.5
+0.2
+0.4
+0.4
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.0
+0.1
+0.1
+0.7
+0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.1
+0.4
+0.7
+0.7
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
+0.4
+0.6
+0.3
+0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
+0.1
+0.5
+0.0
+0.7
nitrogen source
D-Alanine (N)
+0.1
+0.2
+0.4
+0.5
+0.8
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
+0.3
+0.4
+0.5
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.1
+0.9
+0.4
+0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.7
+0.2
+0.2
+0.7
+0.5
stress
R2A with Chlorite 4 mM
+0.4
+0.4
+0.7
+0.9
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.4
+0.7
+0.8
+0.4
stress
R2A with nitrate 150 mM
+0.2
+0.6
+0.8
+0.9
+0.3
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.6
+0.4
+0.5
+0.7
+0.6
stress
R2A with nitrate 200 mM
+0.6
+0.4
+0.7
+0.7
+0.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
+0.6
+0.6
+0.8
+0.5
stress
R2A with Bacitracin 0.5 mg/ml
+0.2
+0.8
+0.7
+0.9
+0.8
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RR42_RS13250
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