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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13225 and RR42_RS13230 are separated by 9 nucleotides
RR42_RS13230 and RR42_RS13235 are separated by 150 nucleotides
RR42_RS13235 and RR42_RS13240 are separated by 63 nucleotides
RR42_RS13240 and RR42_RS13245 are separated by 194 nucleotides
RR42_RS13225: RR42_RS13225 - hypothetical protein, at 2,849,296 to 2,850,024
_RS13225
RR42_RS13230: RR42_RS13230 - hypothetical protein, at 2,850,034 to 2,850,255
_RS13230
RR42_RS13235: RR42_RS13235 - ABC transporter permease, at 2,850,406 to 2,851,197
_RS13235
RR42_RS13240: RR42_RS13240 - mannosyltransferase, at 2,851,261 to 2,852,073
_RS13240
RR42_RS13245: RR42_RS13245 - ABC transporter substrate-binding protein, at 2,852,268 to 2,853,314
_RS13245
Group
Condition
RR42
_RS13225
RR42
_RS13230
RR42
_RS13235
RR42
_RS13240
RR42
_RS13245
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.8
N.D.
-0.5
-0.9
-0.6
temperature
R2A 23C
-0.8
N.D.
-0.5
-0.9
-0.5
stress
R2A with Nickel (II) chloride 0.35 mM
-0.9
N.D.
-0.6
-0.7
-0.4
temperature
R2A 23C
-0.4
N.D.
-0.5
-0.9
-0.5
stress
R2A with nitrate 200 mM
-0.4
N.D.
-0.7
-0.7
-0.5
nitrogen source
casaminos (N)
-0.6
N.D.
-0.5
-0.3
-0.7
r2a
R2A
-0.4
N.D.
-0.6
-0.7
-0.3
carbon source
D,L-Lactate (C)
-0.4
N.D.
-0.4
-0.6
-0.5
stress
R2A with Lomefloxacin 0.00075 mM
-1.0
N.D.
-0.4
-0.2
-0.3
stress
R2A with Zinc 0.1 mM
-0.4
N.D.
-0.3
-0.5
-0.5
nitrogen source
Glucuronamide (N)
-0.3
N.D.
-0.2
-0.4
-0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
N.D.
-0.8
-0.2
-0.2
stress
R2A with Cephalothin 0.25 mg/ml
-0.8
N.D.
-0.3
-0.2
-0.3
nitrogen source
L-Serine (N)
-0.2
N.D.
-0.2
-0.6
-0.5
r2a
R2A
-0.4
N.D.
-0.1
-0.7
-0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.2
N.D.
-0.3
-0.4
-0.5
nitrogen source
L-Isoleucine (N)
-0.4
N.D.
-0.3
-0.1
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
N.D.
-0.3
-0.4
-0.2
stress
R2A with Chlorite 4 mM
+0.3
N.D.
+0.4
+0.4
+0.4
stress
R2A with nitrate 150 mM
+0.3
N.D.
+0.5
+0.2
+0.6
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
N.D.
+0.6
+0.5
+0.3
stress
R2A with Nickel (II) chloride 0.25 mM
+0.8
N.D.
+0.4
+0.0
+0.4
r2a
R2A
+0.6
N.D.
+0.3
+0.5
+0.2
lb
LB
+1.1
N.D.
+0.2
+0.4
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.6
N.D.
+0.5
+0.3
+0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.5
N.D.
+0.4
+0.7
+0.2
stress
R2A with nitrate 200 mM
+0.4
N.D.
+0.4
+0.6
+0.4
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.6
N.D.
+0.4
+0.6
+0.4
stress
R2A with Bacitracin 0.5 mg/ml
+0.6
N.D.
+0.7
+0.2
+0.8
stress
R2A with Nickel (II) chloride 0.5 mM
+1.0
N.D.
+0.7
+0.6
+0.6
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RR42_RS13235
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