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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13195 and RR42_RS13200 are separated by 28 nucleotides
RR42_RS13200 and RR42_RS13205 are separated by 233 nucleotides
RR42_RS13205 and RR42_RS13210 are separated by 108 nucleotides
RR42_RS13210 and RR42_RS13215 are separated by 261 nucleotides
RR42_RS13195: RR42_RS13195 - protein-L-isoaspartate O-methyltransferase, at 2,842,738 to 2,843,634
_RS13195
RR42_RS13200: RR42_RS13200 - stationary phase survival protein SurE, at 2,843,663 to 2,844,415
_RS13200
RR42_RS13205: RR42_RS13205 - NADPH:quinone oxidoreductase, at 2,844,649 to 2,845,623
_RS13205
RR42_RS13210: RR42_RS13210 - porin, at 2,845,732 to 2,846,790
_RS13210
RR42_RS13215: RR42_RS13215 - transcriptional regulator, at 2,847,052 to 2,847,750
_RS13215
Group
Condition
RR42
_RS13195
RR42
_RS13200
RR42
_RS13205
RR42
_RS13210
RR42
_RS13215
stress
R2A with nitrate 200 mM
-1.8
-1.4
-0.6
-0.7
-0.4
stress
R2A with Dimethyl Sulfoxide 5 vol%
-1.1
-1.4
-0.7
-0.7
-0.3
nitrogen source
casaminos (N)
-1.4
-0.6
-0.8
-0.7
-0.7
stress
R2A with Nickel (II) chloride 0.35 mM
-1.7
-0.3
-0.7
-0.5
-0.4
nitrogen source
L-Serine (N)
-1.1
-0.5
-0.6
-0.4
-0.7
nitrogen source
Glucuronamide (N)
-1.1
-0.6
-0.8
-0.5
-0.4
carbon source
Pimelic (C)
-2.0
-0.4
-0.3
-0.5
-0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.9
-0.6
-0.7
-0.5
-0.4
r2a
R2A
-0.7
-0.6
-0.6
-0.6
-0.6
stress
R2A with Zinc 0.1 mM
-0.9
-0.4
-0.4
-0.7
-0.5
temperature
R2A 23C
-0.6
-0.5
-0.4
-0.6
-0.5
nitrogen source
L-Isoleucine (N)
-1.2
-0.4
-0.3
-0.4
-0.2
carbon source
Pimelic (C)
-1.8
-0.3
-0.1
-0.3
-0.1
temperature
R2A 23C
-0.4
-0.6
-0.5
-0.5
-0.5
stress
R2A with Cephalothin 0.25 mg/ml
-0.8
-0.6
-0.5
-0.2
-0.4
nitrogen source
L-Leucine (N)
-1.0
-0.7
-0.4
-0.1
-0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-1.8
-0.9
+0.1
+0.4
-0.1
stress
R2A with Chloride 300 mM
-0.8
-1.0
-0.3
+0.0
+0.1
nitrogen source
D-Alanine (N)
-1.5
-0.3
+0.2
+0.1
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-1.4
-0.5
+0.3
-0.0
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.9
+0.3
-0.6
-0.2
+0.7
stress
R2A with nitrate 150 mM
-0.6
+0.0
+0.4
+0.5
+0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.6
+0.5
+0.4
+0.7
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.6
+0.5
+0.4
+0.2
+0.4
stress
R2A with Bacitracin 0.5 mg/ml
+0.1
+0.4
+0.6
+0.6
+0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.5
+0.7
+0.4
+0.5
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.5
+0.7
+0.7
+0.4
+0.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.6
+0.7
+0.6
+0.6
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.2
+0.8
+0.4
+0.9
+0.7
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+1.2
+0.5
+1.0
+0.6
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