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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13180 and RR42_RS13185 overlap by 4 nucleotides
RR42_RS13185 and RR42_RS13190 are separated by 6 nucleotides
RR42_RS13190 and RR42_RS13195 are separated by 8 nucleotides
RR42_RS13195 and RR42_RS13200 are separated by 28 nucleotides
RR42_RS13180: RR42_RS13180 - 3'-5' exonuclease, at 2,839,845 to 2,840,693
_RS13180
RR42_RS13185: RR42_RS13185 - RNA polymerase sigma factor RpoS, at 2,840,690 to 2,841,868
_RS13185
RR42_RS13190: RR42_RS13190 - outer membrane metallopeptidase lipoprotein nlpD, at 2,841,875 to 2,842,729
_RS13190
RR42_RS13195: RR42_RS13195 - protein-L-isoaspartate O-methyltransferase, at 2,842,738 to 2,843,634
_RS13195
RR42_RS13200: RR42_RS13200 - stationary phase survival protein SurE, at 2,843,663 to 2,844,415
_RS13200
Group
Condition
RR42
_RS13180
RR42
_RS13185
RR42
_RS13190
RR42
_RS13195
RR42
_RS13200
stress
R2A with nitrate 200 mM
-0.8
-0.3
-1.6
-1.8
-1.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.5
-0.6
-1.5
-1.7
-0.3
nitrogen source
casaminos (N)
-0.7
-1.2
-0.6
-1.4
-0.6
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.6
-0.5
-0.7
-1.1
-1.4
temperature
R2A 23C
-0.7
-0.8
-1.2
-0.6
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
+0.1
-1.7
-1.4
-0.5
nitrogen source
L-Glutamine (N)
-0.8
-1.1
-0.9
-0.7
+0.1
nitrogen source
L-Serine (N)
-0.5
-0.6
-0.6
-1.1
-0.5
nitrogen source
D-Alanine (N)
-0.3
-0.2
-0.9
-1.5
-0.3
stress
R2A with Zinc 0.1 mM
-0.9
-0.5
-0.6
-0.9
-0.4
nitrogen source
L-Leucine (N)
-0.6
-0.4
-0.6
-1.0
-0.7
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.3
+0.3
-1.1
-1.8
-0.9
stress
R2A with Cephalothin 0.25 mg/ml
-0.4
-0.6
-0.8
-0.8
-0.6
nitrogen source
L-Isoleucine (N)
-0.5
-0.3
-0.7
-1.2
-0.4
nitrogen source
Glucuronamide (N)
-0.6
-0.8
+0.1
-1.1
-0.6
nitrogen source
L-Lysine (N)
-0.3
-0.3
-1.3
-0.8
-0.2
carbon source
Pimelic (C)
-0.7
+0.8
-0.6
-2.0
-0.4
carbon source
Pimelic (C)
-0.4
+1.0
-0.8
-1.8
-0.3
stress
R2A with Chloride 300 mM
-0.5
+0.4
-1.3
-0.5
-0.3
carbon source
adipate (C)
-0.6
+0.9
-0.2
-1.6
-0.4
carbon source
adipate (C)
-0.4
+0.7
-0.3
-1.5
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
+1.5
+0.8
-0.6
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
+1.9
+0.7
+0.3
-0.9
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+1.3
+1.4
-0.2
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+1.6
+1.9
-0.3
+0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
+2.2
+1.8
-0.3
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+2.5
+1.3
+0.1
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+1.0
+1.0
+0.5
+0.3
+1.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+2.1
+1.8
-0.1
+0.5
stress
R2A with Lomefloxacin 0.001 mM
+5.8
+3.1
+3.1
-0.9
+0.3
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