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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS13120 and RR42_RS13125 are separated by 224 nucleotides
RR42_RS13125 and RR42_RS13130 are separated by 172 nucleotides
RR42_RS13130 and RR42_RS13135 are separated by 85 nucleotides
RR42_RS13135 and RR42_RS13140 are separated by 39 nucleotides
RR42_RS13120: RR42_RS13120 - ribosome-associated GTPase EngA, at 2,826,421 to 2,827,764
_RS13120
RR42_RS13125: RR42_RS13125 - pyrrolo-quinoline quinone, at 2,827,989 to 2,829,110
_RS13125
RR42_RS13130: RR42_RS13130 - membrane protein, at 2,829,283 to 2,829,915
_RS13130
RR42_RS13135: RR42_RS13135 - histidyl-tRNA synthetase, at 2,830,001 to 2,831,389
_RS13135
RR42_RS13140: RR42_RS13140 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 2,831,429 to 2,832,721
_RS13140
Group
Condition
RR42
_RS13120
RR42
_RS13125
RR42
_RS13130
RR42
_RS13135
RR42
_RS13140
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
-5.7
-0.6
N.D.
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
N.D.
-2.1
-2.5
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
-4.9
+0.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
-4.9
+0.5
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
-2.2
-2.0
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-2.8
-1.3
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
N.D.
-0.0
-3.6
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-2.9
-0.6
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-2.7
+0.3
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-1.8
-0.4
N.D.
N.D.
nitrogen source
L-Leucine (N)
N.D.
-0.0
-2.0
N.D.
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
-3.6
+1.6
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-1.8
-0.1
N.D.
N.D.
r2a
R2A
N.D.
-1.1
-0.7
N.D.
N.D.
stress
R2A with nitrate 200 mM
N.D.
-1.0
-0.7
N.D.
N.D.
carbon source
Dodecandioic (C)
N.D.
-0.6
-1.1
N.D.
N.D.
carbon source
propionate (C)
N.D.
-0.3
-1.4
N.D.
N.D.
stress
R2A with Chloride 300 mM
N.D.
-0.2
-1.4
N.D.
N.D.
carbon source
Dodecandioic (C)
N.D.
-1.1
-0.4
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-2.7
+1.4
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
N.D.
+0.1
-1.3
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-1.0
+0.7
N.D.
N.D.
nitrogen source
D-Alanine (N)
N.D.
+0.7
-0.8
N.D.
N.D.
carbon source
D,L-Lactate (C)
N.D.
-0.6
+0.9
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-1.4
+2.1
N.D.
N.D.
carbon source
adipate (C)
N.D.
+1.1
-0.3
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-0.6
+1.5
N.D.
N.D.
carbon source
Octanoic (C)
N.D.
+0.8
+0.7
N.D.
N.D.
carbon source
Heptanoic (C)
N.D.
+0.6
+1.2
N.D.
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
+1.0
+2.3
N.D.
N.D.
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