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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12970 and RR42_RS12975 are separated by 176 nucleotides
RR42_RS12975 and RR42_RS12980 are separated by 86 nucleotides
RR42_RS12980 and RR42_RS12985 are separated by 115 nucleotides
RR42_RS12985 and RR42_RS12990 are separated by 4 nucleotides
RR42_RS12970: RR42_RS12970 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 2,791,075 to 2,792,391
_RS12970
RR42_RS12975: RR42_RS12975 - haloacid dehalogenase, at 2,792,568 to 2,793,359
_RS12975
RR42_RS12980: RR42_RS12980 - chemotaxis protein CheY, at 2,793,446 to 2,794,990
_RS12980
RR42_RS12985: RR42_RS12985 - histidine kinase, at 2,795,106 to 2,796,257
_RS12985
RR42_RS12990: RR42_RS12990 - hypothetical protein, at 2,796,262 to 2,796,825
_RS12990
Group
Condition
RR42
_RS12970
RR42
_RS12975
RR42
_RS12980
RR42
_RS12985
RR42
_RS12990
nitrogen source
L-Citrulline (N)
-0.1
-0.3
-4.4
-3.8
-1.2
nitrogen source
L-Serine (N)
-0.3
-0.4
-5.0
-3.3
-0.8
nitrogen source
D-Alanine (N)
+0.0
-0.3
-4.7
-3.3
-1.2
nitrogen source
nitrite (N)
+0.1
-0.2
-4.8
-3.9
-0.5
nitrogen source
nitrate (N)
+0.0
+0.0
-3.9
-4.4
-0.6
nitrogen source
L-Lysine (N)
-0.0
+0.1
-4.4
-3.2
-0.9
nitrogen source
L-Tryptophan (N)
+0.0
-0.1
-4.3
-3.2
-0.7
nitrogen source
D-Alanine (N)
+0.0
+0.0
-4.2
-3.3
-0.6
nitrogen source
L-Serine (N)
+0.1
-0.1
-3.8
-3.5
-0.5
nitrogen source
L-Valine (N)
+0.1
+0.2
-3.8
-2.7
-1.0
nitrogen source
L-Isoleucine (N)
-0.2
-0.1
-3.6
-2.5
-0.6
nitrogen source
L-Tryptophan (N)
+0.0
-0.2
-3.6
-2.6
-0.5
nitrogen source
L-Threonine (N)
+0.1
-0.4
-3.2
-2.4
-1.0
nitrogen source
L-Isoleucine (N)
-0.1
-0.2
-3.3
-2.4
-0.9
nitrogen source
L-Valine (N)
+0.0
-0.5
-3.0
-2.4
-0.8
nitrogen source
L-Leucine (N)
+0.0
-0.0
-2.9
-3.0
-0.7
nitrogen source
Glycine (N)
-0.0
+0.0
-3.6
-1.9
-0.6
nitrogen source
Glucuronamide (N)
-0.2
-0.1
-3.2
-2.3
+0.2
nitrogen source
L-Leucine (N)
+0.1
-0.1
-2.8
-2.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.1
-1.7
-0.7
-0.4
+0.2
carbon source
Protocatechuic Acid (C)
-0.1
-0.5
-1.0
-0.5
-1.4
carbon source
L-Threonine (C)
+0.1
-0.0
-2.0
-1.1
-0.3
nitrogen source
casaminos (N)
-0.1
-0.4
-0.9
-0.6
-0.4
nitrogen source
L-Phenylalanine (N)
+0.1
+0.0
-1.3
-1.1
-0.2
carbon source
L-Lactate (C)
+0.2
-0.2
-0.9
-0.7
-0.5
carbon source
Protocatechuic Acid (C)
-0.1
+0.4
-0.3
-0.8
-0.9
stress
R2A with Zinc 0.1 mM
-0.5
-0.9
-0.7
-0.3
+0.7
stress
R2A with Lomefloxacin 0.001 mM
-0.1
+0.6
+0.9
+0.7
-0.8
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.1
-0.3
-0.2
+4.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.5
+0.0
-0.1
+0.3
+5.3
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