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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12495 and RR42_RS12500 are separated by 112 nucleotides
RR42_RS12500 and RR42_RS12505 overlap by 4 nucleotides
RR42_RS12505 and RR42_RS12510 are separated by 232 nucleotides
RR42_RS12510 and RR42_RS12515 are separated by 47 nucleotides
RR42_RS12495: RR42_RS12495 - ABC transporter permease, at 2,687,327 to 2,688,511
_RS12495
RR42_RS12500: RR42_RS12500 - enoyl-CoA hydratase, at 2,688,624 to 2,689,403
_RS12500
RR42_RS12505: RR42_RS12505 - TetR family transcriptional regulator, at 2,689,400 to 2,690,005
_RS12505
RR42_RS12510: RR42_RS12510 - hydrolase, at 2,690,238 to 2,691,077
_RS12510
RR42_RS12515: RR42_RS12515 - camphor resistance protein CrcB, at 2,691,125 to 2,691,505
_RS12515
Group
Condition
RR42
_RS12495
RR42
_RS12500
RR42
_RS12505
RR42
_RS12510
RR42
_RS12515
stress
R2A with sodium fluoride 100 mM
-0.0
+0.1
-0.4
-0.3
-2.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.0
-0.3
-0.1
-0.8
-0.9
nitrogen source
L-Glutamine (N)
-0.2
+0.3
+0.1
-1.7
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.2
-0.4
-0.5
-0.6
lb
LB
+0.3
-0.1
-0.5
-1.1
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
-0.1
-0.1
-0.6
-0.6
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
-0.3
-0.1
-0.6
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
-0.4
-0.3
-0.8
+0.4
carbon source
Azelaic (C)
+0.1
-0.2
+0.3
-0.1
-1.0
nitrogen source
L-Phenylalanine (N)
-0.2
+0.2
+0.1
-0.6
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.1
+0.6
+0.2
-1.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.7
+0.1
-0.0
+0.1
-1.3
carbon source
butyrate (C)
-0.3
+0.1
+0.0
-0.6
+0.4
stress
R2A with Lomefloxacin 0.001 mM
+0.5
+0.0
+0.2
-0.2
-0.7
carbon source
succinate (C)
-0.1
-0.0
+0.3
-0.8
+0.5
nitrogen source
casaminos (N)
+0.3
+0.3
+0.1
-0.7
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
+0.2
+0.1
-0.0
-0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
+0.1
+0.5
+0.2
-0.4
carbon source
Disodium Glutarate (C)
+0.0
-0.2
+1.2
-0.3
-0.7
carbon source
Pimelic (C)
-0.2
-0.2
+0.4
-0.3
+0.4
carbon source
Protocatechuic Acid (C)
+0.0
-0.2
+0.6
-0.7
+0.6
carbon source
adipate (C)
-0.4
-0.1
+1.0
-0.3
+0.0
carbon source
Octanoic (C)
+0.0
-0.2
+0.4
-0.3
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.3
-0.3
+0.3
-0.2
stress
R2A with Zinc 0.1 mM
+0.1
+0.2
-0.3
+0.5
+0.2
carbon source
adipate (C)
-0.4
+0.1
+0.8
+0.1
+0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
+0.4
+0.1
+0.2
+0.5
carbon source
Disodium Glutarate (C)
-0.3
+0.1
+1.2
+0.2
+0.1
temperature
R2A 23C
+0.3
+0.2
+0.2
+0.2
+0.5
carbon source
Carbon source Phenylacetic 2.5 mM
+0.4
+0.4
+0.1
+0.2
+0.4
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