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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12480 and RR42_RS12485 are separated by 71 nucleotides
RR42_RS12485 and RR42_RS12490 overlap by 8 nucleotides
RR42_RS12490 and RR42_RS12495 are separated by 50 nucleotides
RR42_RS12495 and RR42_RS12500 are separated by 112 nucleotides
RR42_RS12480: RR42_RS12480 - ABC transporter permease, at 2,684,640 to 2,685,671
_RS12480
RR42_RS12485: RR42_RS12485 - ABC transporter ATP-binding protein, at 2,685,743 to 2,686,489
_RS12485
RR42_RS12490: RR42_RS12490 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,686,482 to 2,687,276
_RS12490
RR42_RS12495: RR42_RS12495 - ABC transporter permease, at 2,687,327 to 2,688,511
_RS12495
RR42_RS12500: RR42_RS12500 - enoyl-CoA hydratase, at 2,688,624 to 2,689,403
_RS12500
Group
Condition
RR42
_RS12480
RR42
_RS12485
RR42
_RS12490
RR42
_RS12495
RR42
_RS12500
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
-1.3
+0.2
+0.1
-0.2
stress
R2A with Bacitracin 0.5 mg/ml
-0.2
-0.8
-0.3
-0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
+0.0
-0.6
-0.3
+0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.1
-1.0
-0.4
+0.5
+0.0
lb
LB
-0.2
-0.7
-0.1
+0.3
-0.1
carbon source
L-Histidine (C)
-0.1
-0.5
-0.3
+0.1
+0.2
carbon source
L-Histidine (C)
+0.0
-0.6
-0.2
-0.2
+0.3
carbon source
adipate (C)
-0.3
-0.1
+0.5
-0.4
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.5
-0.3
-0.4
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.2
-0.6
-0.1
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.5
-0.1
+0.7
+0.1
carbon source
Protocatechuic Acid (C)
+0.2
+0.2
+0.3
-0.1
-0.4
temperature
R2A 23C
+0.1
-0.7
+0.6
+0.1
+0.2
carbon source
Valeric (C)
+0.2
+0.7
-0.2
-0.0
-0.1
carbon source
D,L-Lactate (C)
-0.4
+0.2
+0.5
+0.2
+0.1
nitrogen source
L-Serine (N)
+0.3
-0.2
+0.4
+0.3
-0.1
carbon source
Pimelic (C)
+0.1
+0.5
+0.4
-0.2
-0.2
nitrogen source
L-Phenylalanine (N)
+0.2
-0.1
+0.5
-0.2
+0.2
carbon source
Pimelic (C)
+0.1
+0.4
+0.5
-0.2
-0.2
carbon source
Disodium Glutarate (C)
-0.4
+1.0
+0.3
-0.3
+0.1
stress
R2A with Chloride 300 mM
-0.1
+0.3
+0.6
-0.0
-0.1
carbon source
Dodecandioic (C)
-0.3
+0.9
+0.2
-0.0
-0.1
carbon source
D,L-Lactate (C)
+0.0
+0.4
+0.6
-0.2
-0.1
carbon source
succinate (C)
-0.0
+0.5
+0.5
-0.1
-0.0
carbon source
Hexanoic (C)
-0.1
+0.4
+0.7
-0.0
+0.0
nitrogen source
L-Tryptophan (N)
-0.2
+0.7
+0.2
+0.0
+0.2
carbon source
Hexanoic (C)
+0.1
+0.3
+0.8
-0.1
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
+0.4
+0.3
+0.5
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.8
+0.4
+0.1
+0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
+0.2
+0.4
+0.4
+0.4
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