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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12425 and RR42_RS12430 are separated by 286 nucleotides
RR42_RS12430 and RR42_RS12435 are separated by 381 nucleotides
RR42_RS12435 and RR42_RS12440 are separated by 124 nucleotides
RR42_RS12440 and RR42_RS12445 are separated by 504 nucleotides
RR42_RS12425: RR42_RS12425 - 3-hydroxy-3-methylglutaryl-CoA lyase, at 2,667,938 to 2,668,918
_RS12425
RR42_RS12430: RR42_RS12430 - LysR family transcriptional regulator, at 2,669,205 to 2,670,107
_RS12430
RR42_RS12435: RR42_RS12435 - membrane protein, at 2,670,489 to 2,673,218
_RS12435
RR42_RS12440: RR42_RS12440 - cytochrome C, at 2,673,343 to 2,674,218
_RS12440
RR42_RS12445: RR42_RS12445 - hypothetical protein, at 2,674,723 to 2,675,238
_RS12445
Group
Condition
RR42
_RS12425
RR42
_RS12430
RR42
_RS12435
RR42
_RS12440
RR42
_RS12445
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.2
-1.6
-0.1
-0.1
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.0
-2.1
+0.2
-0.3
N.D.
carbon source
Protocatechuic Acid (C)
-0.2
-1.7
-0.1
-0.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-1.8
-0.0
-0.4
N.D.
carbon source
Pimelic (C)
-0.5
-1.6
+0.0
+0.2
N.D.
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-1.0
-0.6
-0.1
-0.0
N.D.
carbon source
adipate (C)
-0.2
-1.4
+0.1
-0.1
N.D.
carbon source
succinate (C)
-0.2
-1.1
-0.0
-0.3
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-0.9
-0.1
-0.3
N.D.
carbon source
Suberic (C)
-0.8
-0.4
-0.0
+0.1
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-0.3
-0.9
+0.1
+0.2
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.5
-0.6
-0.1
+0.2
N.D.
stress
R2A with Zinc 0.1 mM
-0.3
-0.8
+0.1
+0.1
N.D.
nitrogen source
nitrite (N)
-0.2
-0.7
-0.0
+0.1
N.D.
carbon source
Heptanoic (C)
-0.2
-0.9
+0.2
+0.1
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.7
+0.0
-0.3
N.D.
nitrogen source
L-Glutamine (N)
-0.3
-0.6
+0.1
+0.1
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.9
+0.1
+0.1
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.6
+0.2
+0.0
-0.2
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
-0.7
-0.0
+0.0
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
+0.9
-0.0
-0.2
N.D.
carbon source
L-Lactate (C)
+0.7
+0.1
+0.1
-0.2
N.D.
carbon source
L-Phenylalanine (C)
+0.2
+0.8
+0.1
-0.1
N.D.
carbon source
L-Histidine (C)
+0.4
+0.7
+0.1
-0.2
N.D.
nitrogen source
L-Tryptophan (N)
+0.4
+0.3
+0.1
+0.3
N.D.
temperature
R2A 23C
+0.5
+0.4
+0.1
+0.0
N.D.
nitrogen source
L-Leucine (N)
+0.1
+0.7
+0.1
+0.3
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.9
+0.8
-0.2
-0.3
N.D.
nitrogen source
Glucuronamide (N)
+0.6
+0.5
+0.2
+0.1
N.D.
r2a
R2A
+0.4
+0.7
+0.2
+0.3
N.D.
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