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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12215 and RR42_RS12220 are separated by 63 nucleotides
RR42_RS12220 and RR42_RS12225 are separated by 118 nucleotides
RR42_RS12225 and RR42_RS12230 are separated by 79 nucleotides
RR42_RS12230 and RR42_RS12235 are separated by 117 nucleotides
RR42_RS12215: RR42_RS12215 - ribonuclease, at 2,626,676 to 2,627,173
_RS12215
RR42_RS12220: RR42_RS12220 - MFS transporter, at 2,627,237 to 2,628,514
_RS12220
RR42_RS12225: RR42_RS12225 - LytR family transcriptional regulator, at 2,628,633 to 2,629,463
_RS12225
RR42_RS12230: RR42_RS12230 - histidine kinase, at 2,629,543 to 2,630,733
_RS12230
RR42_RS12235: RR42_RS12235 - terminase, at 2,630,851 to 2,631,216
_RS12235
Group
Condition
RR42
_RS12215
RR42
_RS12220
RR42
_RS12225
RR42
_RS12230
RR42
_RS12235
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.0
-0.3
-0.1
-1.4
carbon source
Suberic (C)
-1.4
+0.1
-0.2
-0.1
-0.2
carbon source
L-Glutamine (C)
-0.7
-0.0
-0.0
-0.1
-0.9
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
-0.1
-0.4
-0.5
-0.9
carbon source
L-Asparagine (C)
-1.3
+0.1
+0.2
-0.2
-0.1
stress
R2A with Chloride 300 mM
-0.4
+0.1
-0.1
-0.4
-0.6
stress
R2A with Cobalt chloride 0.5 mM
-0.3
+0.1
-0.1
+0.1
-1.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
-0.1
-0.3
-0.5
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
+0.2
-0.2
-0.2
-0.9
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.8
-0.1
-0.3
-0.6
-0.8
stress
R2A with Chlorite 4 mM
-0.0
+0.1
-0.0
-0.4
-0.8
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.7
+0.3
-0.1
-0.5
-0.0
carbon source
Disodium Glutarate (C)
-1.3
-0.1
-0.0
+0.3
+0.3
stress
R2A with Chloride 300 mM
-0.3
+0.0
-0.3
-0.7
+0.4
carbon source
L-Histidine (C)
-0.4
-0.2
+0.4
+0.3
-0.7
carbon source
Carbon source Phenylacetic 2.5 mM
+0.5
-0.0
+0.1
-0.5
-0.4
carbon source
Suberic (C)
-0.6
-0.1
-0.1
-0.1
+0.7
temperature
R2A 37C
+0.4
-0.2
-0.3
-0.2
+0.3
temperature
R2A 23C
+0.7
-0.1
-0.1
-0.4
-0.1
carbon source
Hexanoic (C)
+0.6
+0.0
+0.2
+0.5
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.6
+0.1
-0.1
-0.6
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.1
-0.0
+0.2
-1.0
+0.3
carbon source
L-Lactate (C)
+0.7
-0.1
-0.1
-0.1
+0.4
nitrogen source
L-Lysine (N)
+0.5
+0.0
-0.3
+0.2
+0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.2
-0.1
+0.2
+0.7
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.0
-0.2
+1.4
-0.1
carbon source
L-Glutamine (C)
+0.6
-0.0
-0.3
+0.3
+0.7
lb
LB
+0.2
-0.3
+0.2
-0.1
+1.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.0
+0.2
+2.0
-0.5
stress
R2A with Lomefloxacin 0.001 mM
-0.3
+0.2
-0.3
+2.6
+0.9
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RR42_RS12225
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