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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12190 and RR42_RS12195 are separated by 100 nucleotides
RR42_RS12195 and RR42_RS12200 are separated by 423 nucleotides
RR42_RS12200 and RR42_RS12205 are separated by 352 nucleotides
RR42_RS12205 and RR42_RS12210 are separated by 82 nucleotides
RR42_RS12190: RR42_RS12190 - universal stress protein UspA, at 2,621,955 to 2,622,389
_RS12190
RR42_RS12195: RR42_RS12195 - peptidase, at 2,622,490 to 2,623,158
_RS12195
RR42_RS12200: RR42_RS12200 - isocitrate lyase, at 2,623,582 to 2,624,874
_RS12200
RR42_RS12205: RR42_RS12205 - alpha/beta hydrolase, at 2,625,227 to 2,626,189
_RS12205
RR42_RS12210: RR42_RS12210 - gamma-glutamyl cyclotransferase, at 2,626,272 to 2,626,673
_RS12210
Group
Condition
RR42
_RS12190
RR42
_RS12195
RR42
_RS12200
RR42
_RS12205
RR42
_RS12210
stress
R2A with Lomefloxacin 0.001 mM
-0.8
+0.4
-0.1
-0.4
-0.6
lb
LB
-0.2
+0.0
-0.0
-0.1
-0.9
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.3
-0.3
-0.0
-0.5
carbon source
D-Lactate (C)
-0.3
-0.3
-0.1
+0.1
-0.6
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
-0.1
-0.1
+0.1
-0.9
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
-0.1
+0.3
-0.1
-1.1
carbon source
Ethanol (C)
-0.1
-0.2
-0.1
+0.1
-0.5
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
+0.2
-0.3
+0.0
-0.7
carbon source
Octanoic (C)
-0.3
-0.1
-0.6
+0.1
+0.1
stress
R2A with nitrate 200 mM
-0.1
-0.1
+0.2
+0.1
-1.0
carbon source
Protocatechuic Acid (C)
-0.2
+0.4
+0.0
+0.2
-1.2
carbon source
Suberic (C)
-0.3
+0.1
-0.1
+0.1
-0.4
carbon source
L-Histidine (C)
+0.0
+0.2
-0.1
-0.1
-0.6
stress
R2A with Zinc 0.1 mM
-0.1
+0.3
+0.1
-0.1
-0.8
carbon source
Hexanoic (C)
+0.0
-0.0
+0.1
+0.2
-0.8
stress
R2A with Nickel (II) chloride 0.35 mM
-0.7
-0.0
+0.2
+0.1
+0.2
stress
R2A with Bacitracin 0.5 mg/ml
+0.1
-0.3
+0.0
-0.4
+0.3
carbon source
Valeric (C)
-0.3
+0.1
+0.2
+0.1
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.1
-0.7
-0.0
+0.3
nitrogen source
nitrite (N)
-0.3
-0.3
+0.2
-0.2
+0.4
stress
R2A with copper (II) chloride 0.25 mM
-0.1
+0.2
+0.3
-0.2
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.6
+0.2
-0.0
-0.1
+0.4
carbon source
succinate (C)
-0.4
+0.1
-0.2
+0.2
+0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.0
-0.3
-0.3
+0.1
+0.6
carbon source
Disodium Glutarate (C)
-0.4
+0.0
+0.3
+0.2
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
+0.3
-0.5
-0.0
+0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
-0.1
+0.1
+0.1
+0.4
carbon source
Heptanoic (C)
+0.0
+0.2
+0.2
+0.2
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.3
+0.0
-0.2
+0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.3
+0.2
-0.0
+0.7
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RR42_RS12200
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