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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12175 and RR42_RS12180 are separated by 43 nucleotides
RR42_RS12180 and RR42_RS12185 are separated by 271 nucleotides
RR42_RS12185 and RR42_RS12190 are separated by 123 nucleotides
RR42_RS12190 and RR42_RS12195 are separated by 100 nucleotides
RR42_RS12175: RR42_RS12175 - malate synthase, at 2,618,275 to 2,619,861
_RS12175
RR42_RS12180: RR42_RS12180 - haloacid dehalogenase, at 2,619,905 to 2,620,606
_RS12180
RR42_RS12185: RR42_RS12185 - LysR family transcriptional regulator, at 2,620,878 to 2,621,831
_RS12185
RR42_RS12190: RR42_RS12190 - universal stress protein UspA, at 2,621,955 to 2,622,389
_RS12190
RR42_RS12195: RR42_RS12195 - peptidase, at 2,622,490 to 2,623,158
_RS12195
Group
Condition
RR42
_RS12175
RR42
_RS12180
RR42
_RS12185
RR42
_RS12190
RR42
_RS12195
carbon source
Octanoic (C)
-5.6
-1.6
-4.8
-0.3
-0.1
carbon source
butyrate (C)
-6.2
-1.5
-5.0
+0.2
+0.2
carbon source
Azelaic (C)
-5.4
-1.0
-4.6
+0.1
-0.2
carbon source
Hexanoic (C)
-5.7
-0.9
-3.4
-0.3
-0.1
carbon source
Pimelic (C)
-6.0
-1.1
-2.1
-0.0
-0.1
carbon source
Azelaic (C)
-6.4
-0.8
-2.1
+0.1
+0.0
carbon source
Pimelic (C)
-5.3
-1.0
-2.7
-0.2
+0.1
carbon source
Octanoic (C)
-6.5
-1.1
-1.0
-0.2
-0.1
carbon source
L-Leucine (C)
-5.7
-0.5
-2.6
+0.1
-0.0
carbon source
L-Leucine (C)
-6.2
-0.8
-1.5
-0.2
+0.2
carbon source
Ethanol (C)
-5.5
-0.9
-1.9
-0.0
-0.0
carbon source
Hexanoic (C)
-6.5
-1.0
-0.9
+0.0
-0.0
carbon source
L-Proline (C)
-4.8
-1.4
-1.6
-0.2
-0.2
carbon source
Ethanol (C)
-4.7
-1.0
-1.3
-0.1
-0.2
carbon source
L-Tryptophan (C)
-4.5
-1.1
-1.4
+0.1
-0.3
carbon source
Dodecandioic (C)
-4.6
-1.1
-1.1
+0.1
+0.2
carbon source
L-Tryptophan (C)
-4.9
-1.5
-0.2
+0.2
-0.1
carbon source
a-Ketoglutaric (C)
-3.6
-1.3
-1.4
+0.0
+0.0
carbon source
Dodecandioic (C)
-5.2
-1.3
+0.6
-0.2
+0.1
carbon source
Disodium Glutarate (C)
-4.3
-1.0
-0.1
-0.4
+0.0
carbon source
Disodium Glutarate (C)
-3.9
-1.1
-0.6
-0.1
-0.0
carbon source
Suberic (C)
-3.8
-1.0
-0.7
-0.3
+0.3
carbon source
Suberic (C)
-3.6
-1.2
-0.4
-0.3
+0.1
carbon source
a-Ketoglutaric (C)
-4.2
-1.2
+0.4
-0.3
-0.0
carbon source
L-Threonine (C)
-2.0
-0.9
-2.2
+0.1
-0.3
lb
LB
-0.4
+0.1
-4.1
-0.2
+0.0
nitrogen source
L-Leucine (N)
-1.6
-0.8
-1.2
+0.0
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.6
-1.0
-1.0
+0.1
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.7
-0.7
-0.9
-0.0
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
-1.2
+0.9
+0.4
+0.3
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