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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12135 and RR42_RS12140 are separated by 236 nucleotides
RR42_RS12140 and RR42_RS12145 are separated by 391 nucleotides
RR42_RS12145 and RR42_RS12150 are separated by 79 nucleotides
RR42_RS12150 and RR42_RS12155 are separated by 277 nucleotides
RR42_RS12135: RR42_RS12135 - hypothetical protein, at 2,603,286 to 2,605,466
_RS12135
RR42_RS12140: RR42_RS12140 - hypothetical protein, at 2,605,703 to 2,606,746
_RS12140
RR42_RS12145: RR42_RS12145 - adhesin, at 2,607,138 to 2,610,179
_RS12145
RR42_RS12150: RR42_RS12150 - membrane protein, at 2,610,259 to 2,611,914
_RS12150
RR42_RS12155: RR42_RS12155 - molecular chaperone, at 2,612,192 to 2,612,902
_RS12155
Group
Condition
RR42
_RS12135
RR42
_RS12140
RR42
_RS12145
RR42
_RS12150
RR42
_RS12155
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.5
-0.1
-0.1
-1.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.0
-0.4
+0.1
-0.3
-0.7
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.1
-0.1
+0.1
+0.2
-1.6
carbon source
Heptanoic (C)
-0.0
-0.0
+0.0
-0.2
-1.0
stress
R2A with nitrate 200 mM
-0.0
-0.4
+0.1
-0.1
-0.9
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.9
-0.0
-0.2
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+0.1
+0.1
-0.3
-1.0
stress
R2A with nitrate 150 mM
-0.1
+0.2
-0.2
-0.1
-0.6
nitrogen source
L-Serine (N)
-0.0
+0.2
+0.0
+0.2
-1.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
-0.2
+0.1
+0.2
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.1
+0.1
+0.5
-0.8
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.3
+0.1
+0.2
-0.7
carbon source
Octanoic (C)
-0.2
-0.0
-0.2
-0.1
+0.8
carbon source
pyruvate (C)
+0.2
-0.3
-0.2
+0.0
+0.9
temperature
R2A 23C
+0.2
-0.3
+0.2
+0.2
+0.5
nitrogen source
L-Asparagine (N)
-0.1
-0.1
-0.1
-0.1
+1.0
carbon source
L-Malic (C)
-0.1
+0.3
+0.1
-0.3
+0.6
stress
R2A with Lomefloxacin 0.001 mM
+0.3
+0.8
-0.2
-0.4
+0.1
nitrogen source
L-Leucine (N)
+0.2
+0.2
+0.0
-0.3
+0.8
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.2
-0.2
-0.0
+0.4
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.3
-0.0
+0.0
+0.9
carbon source
L-Leucine (C)
+0.1
+0.2
+0.1
-0.2
+0.7
carbon source
Azelaic (C)
+0.0
+0.2
-0.2
-0.1
+0.9
nitrogen source
L-Tryptophan (N)
+0.1
+0.2
-0.1
-0.1
+0.8
carbon source
L-Proline (C)
-0.1
+0.4
+0.0
-0.1
+0.7
carbon source
L-Glutamine (C)
-0.0
-0.1
-0.0
+0.1
+1.1
carbon source
adipate (C)
-0.1
+0.2
+0.0
+0.2
+0.9
stress
R2A with Zinc 0.1 mM
+0.1
-0.4
+0.0
+0.2
+1.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
+0.2
-0.0
+0.3
+0.8
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
+0.0
+0.0
-0.2
+1.5
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