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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS12010 and RR42_RS12015 are separated by 74 nucleotides
RR42_RS12015 and RR42_RS12020 are separated by 125 nucleotides
RR42_RS12020 and RR42_RS12025 are separated by 76 nucleotides
RR42_RS12025 and RR42_RS12030 are separated by 82 nucleotides
RR42_RS12010: RR42_RS12010 - ABC transporter, at 2,574,309 to 2,576,249
_RS12010
RR42_RS12015: RR42_RS12015 - dihydrolipoamide acyltransferase, at 2,576,324 to 2,576,809
_RS12015
RR42_RS12020: RR42_RS12020 - GCN5 family acetyltransferase, at 2,576,935 to 2,577,471
_RS12020
RR42_RS12025: RR42_RS12025 - hypothetical protein, at 2,577,548 to 2,578,123
_RS12025
RR42_RS12030: RR42_RS12030 - DNA repair protein RadA, at 2,578,206 to 2,579,567
_RS12030
Group
Condition
RR42
_RS12010
RR42
_RS12015
RR42
_RS12020
RR42
_RS12025
RR42
_RS12030
carbon source
adipate (C)
+0.1
-3.5
-0.1
-0.3
N.D.
carbon source
L-Alanine (C)
-0.2
-3.5
+0.0
-0.1
N.D.
stress
R2A with nitrate 200 mM
-0.4
-3.0
-0.1
-0.1
N.D.
nitrogen source
Glucuronamide (N)
-0.4
-3.1
+0.1
+0.2
N.D.
carbon source
L-Glutamine (C)
-0.1
-3.1
-0.1
+0.2
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-3.1
+0.2
+0.1
N.D.
carbon source
succinate (C)
+0.4
-2.7
-0.1
-0.1
N.D.
temperature
R2A 23C
-0.1
-1.7
-0.6
-0.1
N.D.
stress
R2A with Chlorite 4 mM
-0.4
-2.8
+0.4
+0.3
N.D.
nitrogen source
L-Threonine (N)
-0.3
-1.8
-0.4
+0.0
N.D.
nitrogen source
L-Valine (N)
-0.2
-2.4
+0.2
-0.1
N.D.
r2a
R2A
-0.0
-2.1
+0.0
-0.3
N.D.
nitrogen source
L-Glutamine (N)
-0.4
-2.2
+0.2
+0.0
N.D.
carbon source
Protocatechuic Acid (C)
+0.5
-2.5
-0.1
-0.0
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
-2.3
+0.1
+0.1
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-1.5
-0.9
+0.2
N.D.
nitrogen source
Glycine (N)
+0.2
-2.5
+0.4
-0.1
N.D.
carbon source
Protocatechuic Acid (C)
+0.3
-2.3
+0.2
+0.1
N.D.
carbon source
Octanoic (C)
+0.5
-2.6
+0.5
-0.1
N.D.
carbon source
Ethanol (C)
+0.1
-2.0
+0.4
-0.0
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-1.9
+0.7
+0.1
N.D.
carbon source
Disodium Glutarate (C)
+0.3
-2.0
+0.4
-0.1
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
-2.2
+0.7
+0.0
N.D.
carbon source
Heptanoic (C)
+0.2
-1.8
+0.3
-0.0
N.D.
carbon source
Dodecandioic (C)
+0.8
-2.6
+0.7
-0.2
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.5
-2.0
+1.0
+0.3
N.D.
carbon source
Dodecandioic (C)
+0.4
-1.8
+0.6
-0.3
N.D.
carbon source
Pimelic (C)
+0.6
-1.4
+0.5
+0.0
N.D.
lb
LB
+0.0
+2.1
-0.2
-0.2
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+1.4
+1.0
+0.2
N.D.
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