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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11995 and RR42_RS12000 are separated by 105 nucleotides
RR42_RS12000 and RR42_RS12005 are separated by 5 nucleotides
RR42_RS12005 and RR42_RS12010 are separated by 366 nucleotides
RR42_RS12010 and RR42_RS12015 are separated by 74 nucleotides
RR42_RS11995: RR42_RS11995 - glutathione ABC transporter ATP-binding protein, at 2,570,029 to 2,571,918
_RS11995
RR42_RS12000: RR42_RS12000 - isoaspartyl peptidase, at 2,572,024 to 2,572,977
_RS12000
RR42_RS12005: RR42_RS12005 - transcriptional regulator, at 2,572,983 to 2,573,942
_RS12005
RR42_RS12010: RR42_RS12010 - ABC transporter, at 2,574,309 to 2,576,249
_RS12010
RR42_RS12015: RR42_RS12015 - dihydrolipoamide acyltransferase, at 2,576,324 to 2,576,809
_RS12015
Group
Condition
RR42
_RS11995
RR42
_RS12000
RR42
_RS12005
RR42
_RS12010
RR42
_RS12015
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
-0.3
-0.1
-0.2
-3.1
nitrogen source
L-Glutamine (N)
-0.3
-0.3
-0.8
-0.4
-2.2
carbon source
adipate (C)
-0.0
-0.5
-0.0
+0.1
-3.5
stress
R2A with Chlorite 4 mM
-0.2
-0.4
-0.2
-0.4
-2.8
carbon source
L-Alanine (C)
+0.0
+0.2
-0.4
-0.2
-3.5
carbon source
L-Glutamine (C)
+0.1
-0.2
-0.3
-0.1
-3.1
stress
R2A with nitrate 200 mM
+0.3
-0.4
+0.1
-0.4
-3.0
nitrogen source
Glucuronamide (N)
-0.1
+0.1
+0.1
-0.4
-3.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
-0.9
-0.2
+0.1
-2.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.6
-0.2
-0.3
-1.9
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-0.4
-0.4
-0.3
-1.6
carbon source
succinate (C)
-0.3
-0.4
+0.1
+0.4
-2.7
carbon source
Octanoic (C)
-0.3
-0.4
-0.0
+0.5
-2.6
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.4
-0.1
-0.5
-2.0
carbon source
Protocatechuic Acid (C)
-0.3
-0.2
-0.0
+0.5
-2.5
carbon source
L-Glutamine (C)
+0.1
-0.1
-0.6
-0.1
-1.9
nitrogen source
Glycine (N)
-0.3
+0.3
-0.2
+0.2
-2.5
nitrogen source
L-Valine (N)
+0.2
+0.1
-0.1
-0.2
-2.4
carbon source
Protocatechuic Acid (C)
-0.2
-0.2
+0.1
+0.3
-2.3
stress
R2A with Chlorite 4 mM
+0.1
-0.0
-0.5
-0.1
-1.9
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
+0.2
-0.3
+0.0
-2.2
carbon source
Disodium Glutarate (C)
-0.2
-0.2
+0.1
+0.3
-2.0
nitrogen source
L-Threonine (N)
+0.1
+0.4
-0.2
-0.3
-1.8
stress
R2A with Lomefloxacin 0.001 mM
+0.0
+0.4
-0.7
+0.2
-1.5
carbon source
Dodecandioic (C)
-0.1
-0.3
+0.2
+0.4
-1.8
carbon source
Pimelic (C)
-0.3
-0.1
-0.2
+0.6
-1.4
carbon source
Dodecandioic (C)
+0.2
+0.0
+0.2
+0.8
-2.6
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-0.8
-0.4
-0.2
+1.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
+0.8
+0.3
+0.6
+0.5
lb
LB
+0.2
-0.6
+0.4
+0.0
+2.1
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