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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11920 and RR42_RS11925 are separated by 13 nucleotides
RR42_RS11925 and RR42_RS11930 are separated by 210 nucleotides
RR42_RS11930 and RR42_RS11935 are separated by 94 nucleotides
RR42_RS11935 and RR42_RS11940 are separated by 142 nucleotides
RR42_RS11920: RR42_RS11920 - ferritin, at 2,555,010 to 2,555,831
_RS11920
RR42_RS11925: RR42_RS11925 - hypothetical protein, at 2,555,845 to 2,556,825
_RS11925
RR42_RS11930: RR42_RS11930 - succinyldiaminopimelate aminotransferase, at 2,557,036 to 2,558,253
_RS11930
RR42_RS11935: RR42_RS11935 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 2,558,348 to 2,559,175
_RS11935
RR42_RS11940: RR42_RS11940 - membrane protein, at 2,559,318 to 2,559,725
_RS11940
Group
Condition
RR42
_RS11920
RR42
_RS11925
RR42
_RS11930
RR42
_RS11935
RR42
_RS11940
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.3
-0.3
N.D.
N.D.
carbon source
Azelaic (C)
-0.1
-0.4
-0.2
N.D.
N.D.
carbon source
succinate (C)
-0.3
-0.3
-0.1
N.D.
N.D.
carbon source
Suberic (C)
-0.2
-0.3
-0.1
N.D.
N.D.
stress
R2A with Bacitracin 0.5 mg/ml
-0.2
-0.2
-0.2
N.D.
N.D.
carbon source
Disodium Glutarate (C)
-0.3
-0.4
+0.1
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.1
-0.3
-0.3
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.2
-0.4
N.D.
N.D.
temperature
R2A 37C
-0.4
-0.1
+0.1
N.D.
N.D.
nitrogen source
D-Alanine (N)
-0.5
+0.1
-0.1
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-0.1
-0.4
N.D.
N.D.
carbon source
succinate (C)
+0.1
-0.4
-0.1
N.D.
N.D.
lb
LB
+0.6
-0.3
-0.5
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.3
-0.3
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.2
+0.3
-0.2
N.D.
N.D.
carbon source
D-Lactate (C)
-0.4
+0.1
+0.2
N.D.
N.D.
carbon source
L-Tryptophan (C)
-0.5
+0.1
+0.3
N.D.
N.D.
carbon source
adipate (C)
+0.3
-0.2
-0.1
N.D.
N.D.
nitrogen source
L-Serine (N)
-0.3
+0.3
-0.1
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
+0.3
-0.2
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.2
-0.3
N.D.
N.D.
carbon source
Ethanol (C)
-0.2
+0.4
+0.1
N.D.
N.D.
carbon source
propionate (C)
-0.2
+0.5
+0.0
N.D.
N.D.
carbon source
Ethanol (C)
+0.3
+0.3
-0.1
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.3
+0.5
-0.2
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.5
+0.2
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.3
+0.2
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.1
+0.3
+0.6
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.5
+0.7
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.1
+0.3
+2.0
N.D.
N.D.
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