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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11710 and RR42_RS11715 are separated by 797 nucleotides
RR42_RS11715 and RR42_RS11725 are separated by 1464 nucleotides
RR42_RS11725 and RR42_RS11730 overlap by 4 nucleotides
RR42_RS11730 and RR42_RS11740 are separated by 795 nucleotides
RR42_RS11710: RR42_RS11710 - hypothetical protein, at 2,506,189 to 2,506,416
_RS11710
RR42_RS11715: RR42_RS11715 - DNA-binding protein, at 2,507,214 to 2,507,735
_RS11715
RR42_RS11725: RR42_RS11725 - toxin PIN, at 2,509,200 to 2,509,775
_RS11725
RR42_RS11730: RR42_RS11730 - DNA-binding protein, at 2,509,772 to 2,510,239
_RS11730
RR42_RS11740: RR42_RS11740 - GMP synthase, at 2,511,035 to 2,512,654
_RS11740
Group
Condition
RR42
_RS11710
RR42
_RS11715
RR42
_RS11725
RR42
_RS11730
RR42
_RS11740
nitrogen source
L-Leucine (N)
N.D.
-0.6
-0.4
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.7
-0.0
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.5
-0.2
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
-0.6
-0.1
N.D.
N.D.
nitrogen source
Glucuronamide (N)
N.D.
-0.2
-0.5
N.D.
N.D.
carbon source
Heptanoic (C)
N.D.
-0.5
-0.1
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
-0.5
-0.1
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-0.1
-0.4
N.D.
N.D.
stress
R2A with nitrate 150 mM
N.D.
-0.3
-0.3
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.5
+0.1
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
-0.5
+0.1
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-0.7
+0.3
N.D.
N.D.
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
-0.6
+0.2
N.D.
N.D.
carbon source
Ethanol (C)
N.D.
-0.5
+0.2
N.D.
N.D.
carbon source
Heptanoic (C)
N.D.
-0.4
+0.2
N.D.
N.D.
carbon source
Disodium Glutarate (C)
N.D.
-0.3
+0.2
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
N.D.
-0.3
+0.2
N.D.
N.D.
stress
R2A with nitrate 200 mM
N.D.
-0.4
+0.3
N.D.
N.D.
carbon source
Valeric (C)
N.D.
-0.3
+0.2
N.D.
N.D.
carbon source
L-Phenylalanine (C)
N.D.
-0.3
+0.2
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.6
+0.6
N.D.
N.D.
carbon source
adipate (C)
N.D.
-0.3
+0.3
N.D.
N.D.
carbon source
succinate (C)
N.D.
-0.3
+0.3
N.D.
N.D.
nitrogen source
L-Lysine (N)
N.D.
-0.3
+0.4
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-0.2
+0.4
N.D.
N.D.
carbon source
L-Lactate (C)
N.D.
-0.1
+0.4
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
N.D.
+0.5
-0.1
N.D.
N.D.
stress
R2A with nitrate 200 mM
N.D.
+0.1
+0.5
N.D.
N.D.
nitrogen source
L-Tryptophan (N)
N.D.
+0.4
+0.2
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
+0.5
+0.2
N.D.
N.D.
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