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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11695 and RR42_RS11700 are separated by 107 nucleotides
RR42_RS11700 and RR42_RS11705 are separated by 52 nucleotides
RR42_RS11705 and RR42_RS11710 are separated by 193 nucleotides
RR42_RS11710 and RR42_RS11715 are separated by 797 nucleotides
RR42_RS11695: RR42_RS11695 - nitroreductase, at 2,504,163 to 2,504,819
_RS11695
RR42_RS11700: RR42_RS11700 - hypothetical protein, at 2,504,927 to 2,505,580
_RS11700
RR42_RS11705: RR42_RS11705 - universal stress protein UspA, at 2,505,633 to 2,505,995
_RS11705
RR42_RS11710: RR42_RS11710 - hypothetical protein, at 2,506,189 to 2,506,416
_RS11710
RR42_RS11715: RR42_RS11715 - DNA-binding protein, at 2,507,214 to 2,507,735
_RS11715
Group
Condition
RR42
_RS11695
RR42
_RS11700
RR42
_RS11705
RR42
_RS11710
RR42
_RS11715
carbon source
Octanoic (C)
-0.2
-0.4
-0.6
N.D.
-0.1
nitrogen source
L-Lysine (N)
+0.1
-0.0
-1.0
N.D.
-0.3
carbon source
Heptanoic (C)
-0.1
-0.3
-0.2
N.D.
-0.4
carbon source
Heptanoic (C)
+0.0
-0.1
-0.3
N.D.
-0.5
carbon source
Dodecandioic (C)
-0.1
-0.1
-0.7
N.D.
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+0.2
-0.2
N.D.
-0.6
nitrogen source
L-Phenylalanine (N)
+0.1
-0.3
-0.1
N.D.
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.3
-0.5
N.D.
+0.1
nitrogen source
L-Leucine (N)
+0.2
-0.2
+0.1
N.D.
-0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
+0.2
-0.7
N.D.
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.5
-0.1
N.D.
+0.1
nitrogen source
L-Isoleucine (N)
+0.2
+0.0
-0.8
N.D.
+0.3
stress
R2A with nitrate 200 mM
-0.3
-0.2
+0.6
N.D.
-0.4
carbon source
D-Gluconic Acid (C)
+0.2
-0.1
-0.5
N.D.
+0.2
carbon source
butyrate (C)
+0.2
+0.2
-0.6
N.D.
-0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.4
+0.1
-0.3
N.D.
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-0.1
+0.3
N.D.
-0.7
nitrogen source
L-Valine (N)
+0.1
-0.5
+0.0
N.D.
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.2
+0.4
N.D.
-0.5
carbon source
L-Leucine (C)
+0.2
+0.2
-0.5
N.D.
+0.1
temperature
R2A 37C
+0.3
-0.4
+0.3
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
+0.2
+0.6
N.D.
-0.6
nitrogen source
L-Tryptophan (N)
-0.1
+0.3
-0.3
N.D.
+0.4
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
-0.3
-0.1
N.D.
+0.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
+0.3
-0.3
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.1
+0.5
N.D.
-0.3
stress
R2A with Sisomicin 0.035 mg/ml
-0.2
-0.3
+0.6
N.D.
+0.3
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+0.4
+0.5
N.D.
-0.1
nitrogen source
L-Glutamine (N)
+0.4
+0.4
+0.2
N.D.
-0.1
stress
R2A with Zinc 0.1 mM
+0.1
+0.3
+0.7
N.D.
+0.2
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