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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11685 and RR42_RS11690 are separated by 556 nucleotides
RR42_RS11690 and RR42_RS11695 are separated by 292 nucleotides
RR42_RS11695 and RR42_RS11700 are separated by 107 nucleotides
RR42_RS11700 and RR42_RS11705 are separated by 52 nucleotides
RR42_RS11685: RR42_RS11685 - hypothetical protein, at 2,501,752 to 2,501,997
_RS11685
RR42_RS11690: RR42_RS11690 - erythromycin esterase, at 2,502,554 to 2,503,870
_RS11690
RR42_RS11695: RR42_RS11695 - nitroreductase, at 2,504,163 to 2,504,819
_RS11695
RR42_RS11700: RR42_RS11700 - hypothetical protein, at 2,504,927 to 2,505,580
_RS11700
RR42_RS11705: RR42_RS11705 - universal stress protein UspA, at 2,505,633 to 2,505,995
_RS11705
Group
Condition
RR42
_RS11685
RR42
_RS11690
RR42
_RS11695
RR42
_RS11700
RR42
_RS11705
carbon source
Octanoic (C)
N.D.
-0.2
-0.2
-0.4
-0.6
carbon source
Azelaic (C)
N.D.
-0.2
-0.4
-0.3
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.3
+0.1
-0.3
-0.5
carbon source
Dodecandioic (C)
N.D.
+0.0
-0.1
-0.1
-0.7
nitrogen source
L-Lysine (N)
N.D.
+0.0
+0.1
-0.0
-1.0
carbon source
Protocatechuic Acid (C)
N.D.
-0.2
-0.1
-0.5
+0.0
carbon source
D-Gluconic Acid (C)
N.D.
-0.3
+0.2
-0.1
-0.5
stress
R2A with Cobalt chloride 0.5 mM
N.D.
+0.1
-0.4
+0.1
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.2
-0.3
+0.2
-0.2
nitrogen source
L-Isoleucine (N)
N.D.
+0.1
+0.2
+0.0
-0.8
carbon source
D-Lactate (C)
N.D.
-0.2
+0.2
-0.0
-0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
+0.0
+0.0
+0.2
-0.7
carbon source
Heptanoic (C)
N.D.
+0.2
-0.1
-0.3
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
+0.2
+0.2
-0.5
-0.1
carbon source
butyrate (C)
N.D.
+0.0
+0.2
+0.2
-0.6
carbon source
L-Leucine (C)
N.D.
-0.0
+0.2
+0.2
-0.5
nitrogen source
L-Valine (N)
N.D.
+0.2
+0.2
-0.2
-0.2
stress
R2A with nitrate 200 mM
N.D.
-0.1
-0.3
-0.2
+0.6
nitrogen source
Glucuronamide (N)
N.D.
-0.3
+0.3
-0.2
+0.2
stress
R2A with Sisomicin 0.035 mg/ml
N.D.
-0.1
-0.2
-0.3
+0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
-0.1
+0.4
+0.3
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
+0.2
-0.1
-0.2
+0.3
stress
R2A with copper (II) chloride 0.25 mM
N.D.
-0.3
+0.1
+0.0
+0.5
temperature
R2A 37C
N.D.
+0.2
+0.3
-0.4
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.3
+0.0
+0.3
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-0.2
+0.1
+0.1
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
+0.1
+0.0
+0.2
+0.6
nitrogen source
L-Glutamine (N)
N.D.
+0.3
+0.4
+0.4
+0.2
stress
R2A with Zinc 0.1 mM
N.D.
+0.2
+0.1
+0.3
+0.7
stress
R2A with Lomefloxacin 0.001 mM
N.D.
+0.7
+0.1
+0.4
+0.5
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