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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11635 and RR42_RS11640 are separated by 457 nucleotides
RR42_RS11640 and RR42_RS11645 are separated by 174 nucleotides
RR42_RS11645 and RR42_RS11650 are separated by 176 nucleotides
RR42_RS11650 and RR42_RS11655 are separated by 155 nucleotides
RR42_RS11635: RR42_RS11635 - signal transduction protein, at 2,493,671 to 2,494,135
_RS11635
RR42_RS11640: RR42_RS11640 - hypothetical protein, at 2,494,593 to 2,495,000
_RS11640
RR42_RS11645: RR42_RS11645 - membrane protein, at 2,495,175 to 2,495,345
_RS11645
RR42_RS11650: RR42_RS11650 - poly-beta-hydroxybutyrate polymerase, at 2,495,522 to 2,497,309
_RS11650
RR42_RS11655: RR42_RS11655 - heat-shock protein Hsp20, at 2,497,465 to 2,497,887
_RS11655
Group
Condition
RR42
_RS11635
RR42
_RS11640
RR42
_RS11645
RR42
_RS11650
RR42
_RS11655
nitrogen source
Glucuronamide (N)
-0.1
-0.0
N.D.
+0.1
-3.6
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
-0.3
N.D.
-0.3
-1.6
stress
R2A with Nickel (II) chloride 0.25 mM
-0.4
+0.1
N.D.
-0.2
-1.4
carbon source
L-Histidine (C)
-0.1
-0.0
N.D.
-0.0
-1.7
carbon source
L-Threonine (C)
-0.9
+0.2
N.D.
+0.1
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.2
N.D.
+0.2
-1.2
nitrogen source
casaminos (N)
+0.3
-0.0
N.D.
-0.0
-1.7
carbon source
L-Histidine (C)
-0.1
+0.2
N.D.
-0.1
-1.4
nitrogen source
Glycine (N)
-0.0
-0.2
N.D.
+0.0
-1.3
nitrogen source
L-Tryptophan (N)
-0.4
+0.0
N.D.
-0.1
-0.8
stress
R2A with Cobalt chloride 0.3 mM
-0.8
+0.1
N.D.
+0.0
-0.6
stress
R2A with Chloride 300 mM
-0.1
+0.1
N.D.
+0.2
-1.6
nitrogen source
L-Phenylalanine (N)
-0.2
-0.1
N.D.
-0.1
-0.9
carbon source
succinate (C)
-0.7
+0.1
N.D.
-0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.1
N.D.
+0.6
-1.8
stress
R2A with Cobalt chloride 0.5 mM
-0.5
+0.4
N.D.
-0.2
-0.8
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
+0.4
N.D.
-0.1
-1.4
nitrogen source
L-Isoleucine (N)
+0.3
+0.0
N.D.
-0.1
-0.9
stress
R2A with Sisomicin 0.035 mg/ml
-0.3
+0.2
N.D.
+0.2
-0.7
carbon source
D-Lactate (C)
-0.6
+0.2
N.D.
-0.3
+0.2
nitrogen source
D-Alanine (N)
+0.5
+0.0
N.D.
+0.1
-1.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.2
N.D.
+0.4
-0.9
carbon source
succinate (C)
+0.4
+0.2
N.D.
+0.0
-0.8
nitrogen source
L-Leucine (N)
+0.4
+0.0
N.D.
+0.3
-0.6
stress
R2A with Vancomycin 0.5 mg/ml
-0.6
+0.4
N.D.
+0.3
+0.1
carbon source
Protocatechuic Acid (C)
-0.1
-0.4
N.D.
+0.2
+1.0
carbon source
Dodecandioic (C)
+0.4
+0.0
N.D.
+0.1
+0.8
carbon source
D,L-Lactate (C)
+0.3
+0.1
N.D.
+0.0
+0.9
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.2
N.D.
+0.1
+0.8
carbon source
adipate (C)
+0.8
-0.0
N.D.
+0.0
+0.9
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