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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11625 and RR42_RS11630 are separated by 133 nucleotides
RR42_RS11630 and RR42_RS11635 are separated by 341 nucleotides
RR42_RS11635 and RR42_RS11640 are separated by 457 nucleotides
RR42_RS11640 and RR42_RS11645 are separated by 174 nucleotides
RR42_RS11625: RR42_RS11625 - hypothetical protein, at 2,489,264 to 2,490,613
_RS11625
RR42_RS11630: RR42_RS11630 - magnesium ABC transporter ATPase, at 2,490,747 to 2,493,329
_RS11630
RR42_RS11635: RR42_RS11635 - signal transduction protein, at 2,493,671 to 2,494,135
_RS11635
RR42_RS11640: RR42_RS11640 - hypothetical protein, at 2,494,593 to 2,495,000
_RS11640
RR42_RS11645: RR42_RS11645 - membrane protein, at 2,495,175 to 2,495,345
_RS11645
Group
Condition
RR42
_RS11625
RR42
_RS11630
RR42
_RS11635
RR42
_RS11640
RR42
_RS11645
carbon source
L-Tryptophan (C)
-0.3
-0.2
-0.3
-0.2
N.D.
lb
LB
-0.5
-0.2
-0.2
-0.1
N.D.
carbon source
succinate (C)
-0.1
-0.2
-0.7
+0.1
N.D.
stress
R2A with Zinc 0.1 mM
-0.1
+0.1
-0.7
-0.3
N.D.
carbon source
Trisodium citrate (C)
+0.0
-0.0
-0.8
-0.1
N.D.
carbon source
L-Glutamine (C)
-0.1
-0.1
-0.7
+0.1
N.D.
carbon source
L-Threonine (C)
+0.1
+0.0
-0.9
+0.2
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+0.0
+0.1
-0.8
+0.1
N.D.
carbon source
D-Lactate (C)
+0.1
-0.1
-0.6
+0.2
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.3
+0.1
-0.3
-0.3
N.D.
carbon source
Suberic (C)
-0.3
-0.2
+0.4
-0.1
N.D.
nitrogen source
L-Citrulline (N)
+0.2
+0.1
-0.4
-0.1
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
+0.0
-0.6
+0.4
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.1
+0.3
-0.3
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-0.2
+0.5
-0.1
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+0.2
-0.5
+0.4
N.D.
carbon source
succinate (C)
-0.2
-0.0
+0.4
+0.2
N.D.
carbon source
Pimelic (C)
+0.1
-0.1
+0.5
-0.2
N.D.
carbon source
L-Lactate (C)
-0.3
+0.1
+0.6
+0.0
N.D.
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.4
-0.1
+0.4
-0.2
N.D.
nitrogen source
L-Isoleucine (N)
-0.3
+0.2
+0.5
+0.1
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
+0.1
+0.6
+0.1
N.D.
nitrogen source
L-Tryptophan (N)
-0.1
+0.1
+0.6
-0.0
N.D.
carbon source
a-Ketoglutaric (C)
-0.1
+0.2
+0.6
+0.0
N.D.
nitrogen source
L-Serine (N)
-0.1
+0.2
+0.5
+0.1
N.D.
stress
R2A with Chlorite 4 mM
+0.1
+0.1
+0.4
+0.1
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.1
+0.2
+0.3
N.D.
carbon source
Valeric (C)
+0.4
+0.2
+0.1
+0.2
N.D.
carbon source
L-Asparagine (C)
+0.1
+0.1
+0.6
+0.1
N.D.
carbon source
adipate (C)
+0.4
+0.1
+0.8
-0.0
N.D.
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