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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11615 and RR42_RS11620 are separated by 110 nucleotides
RR42_RS11620 and RR42_RS11625 are separated by 152 nucleotides
RR42_RS11625 and RR42_RS11630 are separated by 133 nucleotides
RR42_RS11630 and RR42_RS11635 are separated by 341 nucleotides
RR42_RS11615: RR42_RS11615 - GTP-binding protein, at 2,486,971 to 2,488,245
_RS11615
RR42_RS11620: RR42_RS11620 - polysaccharide deacetylase, at 2,488,356 to 2,489,111
_RS11620
RR42_RS11625: RR42_RS11625 - hypothetical protein, at 2,489,264 to 2,490,613
_RS11625
RR42_RS11630: RR42_RS11630 - magnesium ABC transporter ATPase, at 2,490,747 to 2,493,329
_RS11630
RR42_RS11635: RR42_RS11635 - signal transduction protein, at 2,493,671 to 2,494,135
_RS11635
Group
Condition
RR42
_RS11615
RR42
_RS11620
RR42
_RS11625
RR42
_RS11630
RR42
_RS11635
carbon source
succinate (C)
-0.1
-0.4
-0.1
-0.2
-0.7
stress
R2A with Zinc 0.1 mM
-0.1
-0.4
-0.1
+0.1
-0.7
carbon source
L-Glutamine (C)
+0.0
-0.2
-0.1
-0.1
-0.7
carbon source
D-Lactate (C)
-0.2
-0.1
+0.1
-0.1
-0.6
carbon source
L-Threonine (C)
+0.1
-0.1
+0.1
+0.0
-0.9
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-1.2
+0.1
+0.3
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+0.2
-0.2
-0.2
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.4
-0.1
+0.1
+0.3
lb
LB
-0.0
+0.4
-0.5
-0.2
-0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.2
-0.2
+0.3
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
-0.5
+0.3
-0.0
+0.1
carbon source
Suberic (C)
-0.2
-0.1
-0.3
-0.2
+0.4
carbon source
D,L-Lactate (C)
-0.6
+0.2
-0.2
-0.0
+0.3
nitrogen source
L-Valine (N)
-0.1
-0.4
-0.2
+0.2
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.5
+0.4
+0.0
+0.2
nitrogen source
D-Alanine (N)
-0.0
-0.4
+0.1
-0.0
+0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.5
+0.3
+0.0
+0.1
-0.8
stress
R2A with Cobalt chloride 0.5 mM
+0.3
+0.0
+0.1
+0.2
-0.5
carbon source
adipate (C)
-0.2
-0.2
-0.0
-0.0
+0.6
carbon source
Dodecandioic (C)
-0.3
+0.2
+0.1
-0.1
+0.4
carbon source
L-Lactate (C)
+0.1
+0.1
-0.3
+0.1
+0.6
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
+0.2
+0.0
-0.2
+0.5
carbon source
L-Alanine (C)
+0.1
+0.5
-0.2
+0.2
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.2
-0.2
+0.1
+0.6
nitrogen source
L-Serine (N)
+0.3
+0.1
-0.1
+0.2
+0.5
carbon source
a-Ketoglutaric (C)
+0.0
+0.3
-0.1
+0.2
+0.6
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.1
+0.2
+0.4
-0.1
+0.4
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.4
+0.2
+0.1
+0.2
carbon source
adipate (C)
+0.2
-0.3
+0.4
+0.1
+0.8
stress
R2A with Lomefloxacin 0.001 mM
+0.0
+0.9
+0.2
-0.1
+0.3
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