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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11595 and RR42_RS11600 are separated by 607 nucleotides
RR42_RS11600 and RR42_RS11605 are separated by 171 nucleotides
RR42_RS11605 and RR42_RS11610 are separated by 149 nucleotides
RR42_RS11610 and RR42_RS11615 are separated by 86 nucleotides
RR42_RS11595: RR42_RS11595 - hypothetical protein, at 2,482,157 to 2,482,477
_RS11595
RR42_RS11600: RR42_RS11600 - flavin reductase, at 2,483,085 to 2,483,627
_RS11600
RR42_RS11605: RR42_RS11605 - OsmY domain-containing protein, at 2,483,799 to 2,484,443
_RS11605
RR42_RS11610: RR42_RS11610 - serine hydrolase, at 2,484,593 to 2,486,884
_RS11610
RR42_RS11615: RR42_RS11615 - GTP-binding protein, at 2,486,971 to 2,488,245
_RS11615
Group
Condition
RR42
_RS11595
RR42
_RS11600
RR42
_RS11605
RR42
_RS11610
RR42
_RS11615
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.1
-1.1
-0.1
-0.3
carbon source
Azelaic (C)
+0.5
-0.3
-0.8
-0.1
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.5
-0.6
-0.1
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
+0.1
-0.4
-0.1
+0.1
carbon source
succinate (C)
-0.3
-0.3
+0.3
-0.1
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.3
+0.1
-1.2
+0.4
+0.0
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-0.3
-0.5
+0.1
+0.5
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-0.4
+0.3
-0.3
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
-0.2
-0.4
-0.1
+0.1
carbon source
pyruvate (C)
-0.1
-0.5
+0.4
-0.1
+0.1
carbon source
D,L-Lactate (C)
+0.0
+0.1
+0.4
-0.1
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.3
+0.6
-0.1
-0.4
carbon source
L-Asparagine (C)
+0.5
-0.4
-0.2
+0.1
+0.1
stress
R2A with A22 0.01 mg/ml
+0.2
-0.3
+0.4
-0.2
+0.0
carbon source
Heptanoic (C)
+0.7
-0.2
-0.1
+0.1
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.3
-0.4
+0.3
-0.1
+0.1
carbon source
Protocatechuic Acid (C)
+0.7
-0.5
+0.1
+0.1
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.4
-0.5
+0.4
+0.2
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
-0.0
+0.7
-0.1
-0.1
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
+0.1
-0.5
+0.1
+0.3
nitrogen source
L-Valine (N)
-0.3
+0.2
+0.5
+0.1
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
-0.5
+0.3
+0.2
+0.2
carbon source
a-Ketoglutaric (C)
+0.2
-0.2
+0.5
-0.2
+0.2
stress
R2A with nitrate 200 mM
+0.6
-0.3
+0.2
-0.0
+0.1
carbon source
Protocatechuic Acid (C)
+0.1
-0.2
+0.6
+0.1
+0.1
carbon source
Heptanoic (C)
+0.5
-0.0
+0.3
+0.2
-0.1
carbon source
Disodium Glutarate (C)
-0.0
+0.1
+0.8
+0.1
-0.0
carbon source
Suberic (C)
+0.6
-0.1
+0.6
+0.2
-0.2
temperature
R2A 37C
+0.4
+0.3
+0.1
+0.0
+0.2
lb
LB
+0.5
+0.3
+0.2
+0.2
-0.0
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