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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11560 and RR42_RS11565 are separated by 675 nucleotides
RR42_RS11565 and RR42_RS11570 are separated by 601 nucleotides
RR42_RS11570 and RR42_RS11575 are separated by 332 nucleotides
RR42_RS11575 and RR42_RS11580 are separated by 92 nucleotides
RR42_RS11560: RR42_RS11560 - protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO, at 2,472,357 to 2,474,561
_RS11560
RR42_RS11565: RR42_RS11565 - diguanylate cyclase, at 2,475,237 to 2,477,711
_RS11565
RR42_RS11570: RR42_RS11570 - magnesium transporter MgtC, at 2,478,313 to 2,478,633
_RS11570
RR42_RS11575: RR42_RS11575 - hypothetical protein, at 2,478,966 to 2,479,154
_RS11575
RR42_RS11580: RR42_RS11580 - hypothetical protein, at 2,479,247 to 2,480,086
_RS11580
Group
Condition
RR42
_RS11560
RR42
_RS11565
RR42
_RS11570
RR42
_RS11575
RR42
_RS11580
carbon source
Protocatechuic Acid (C)
+0.0
-0.1
N.D.
N.D.
-2.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.1
N.D.
N.D.
-2.1
carbon source
Azelaic (C)
-0.0
-0.3
N.D.
N.D.
-1.5
carbon source
succinate (C)
+0.0
-0.0
N.D.
N.D.
-1.7
carbon source
Dodecandioic (C)
+0.1
-0.1
N.D.
N.D.
-1.7
stress
R2A with Zinc 0.1 mM
+0.0
-0.2
N.D.
N.D.
-1.4
carbon source
D,L-Lactate (C)
-0.0
-0.0
N.D.
N.D.
-1.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.0
+0.2
N.D.
N.D.
-1.5
r2a
R2A
+0.0
+0.1
N.D.
N.D.
-1.4
carbon source
succinate (C)
-0.2
-0.0
N.D.
N.D.
-1.1
carbon source
L-Lactate (C)
-0.1
+0.1
N.D.
N.D.
-1.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.9
+0.1
N.D.
N.D.
-0.3
carbon source
Dodecandioic (C)
+0.2
-0.1
N.D.
N.D.
-1.2
carbon source
Trisodium citrate (C)
-0.2
-0.1
N.D.
N.D.
-0.9
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.2
N.D.
N.D.
-1.1
stress
R2A with Cephalothin 0.25 mg/ml
-0.0
+0.1
N.D.
N.D.
-1.1
temperature
R2A 23C
+0.0
-0.1
N.D.
N.D.
-1.0
stress
R2A with Sisomicin 0.035 mg/ml
+0.1
+0.0
N.D.
N.D.
-1.2
carbon source
Octanoic (C)
+0.1
-0.2
N.D.
N.D.
-0.9
stress
R2A with nitrate 200 mM
+0.1
-0.0
N.D.
N.D.
-1.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
+0.0
N.D.
N.D.
-1.1
carbon source
Heptanoic (C)
+0.2
-0.1
N.D.
N.D.
-1.0
carbon source
Hexanoic (C)
+0.2
+0.0
N.D.
N.D.
-0.9
nitrogen source
L-Isoleucine (N)
-0.2
-0.1
N.D.
N.D.
+0.8
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.0
N.D.
N.D.
+0.9
carbon source
L-Tryptophan (C)
-0.2
+0.0
N.D.
N.D.
+1.0
carbon source
L-Asparagine (C)
+0.1
-0.1
N.D.
N.D.
+1.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.1
N.D.
N.D.
+1.1
carbon source
succinate (C)
+0.1
-0.0
N.D.
N.D.
+1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.3
N.D.
N.D.
+1.5
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