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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11550 and RR42_RS11555 are separated by 151 nucleotides
RR42_RS11555 and RR42_RS11560 are separated by 109 nucleotides
RR42_RS11560 and RR42_RS11565 are separated by 675 nucleotides
RR42_RS11565 and RR42_RS11570 are separated by 601 nucleotides
RR42_RS11550: RR42_RS11550 - 3-oxoacyl-ACP reductase, at 2,470,438 to 2,471,172
_RS11550
RR42_RS11555: RR42_RS11555 - LysR family transcriptional regulator, at 2,471,324 to 2,472,247
_RS11555
RR42_RS11560: RR42_RS11560 - protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO, at 2,472,357 to 2,474,561
_RS11560
RR42_RS11565: RR42_RS11565 - diguanylate cyclase, at 2,475,237 to 2,477,711
_RS11565
RR42_RS11570: RR42_RS11570 - magnesium transporter MgtC, at 2,478,313 to 2,478,633
_RS11570
Group
Condition
RR42
_RS11550
RR42
_RS11555
RR42
_RS11560
RR42
_RS11565
RR42
_RS11570
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.9
+0.1
-0.9
+0.1
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.9
-0.7
-0.1
+0.1
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-1.0
-0.1
-0.0
-0.1
N.D.
carbon source
D-Lactate (C)
-1.2
-0.0
+0.0
-0.1
N.D.
carbon source
succinate (C)
-0.8
-0.1
-0.2
-0.0
N.D.
carbon source
a-Ketoglutaric (C)
-0.9
-0.2
-0.0
+0.1
N.D.
carbon source
Trisodium citrate (C)
-0.8
-0.1
-0.2
-0.1
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-1.1
-0.2
+0.2
+0.1
N.D.
carbon source
propionate (C)
-0.8
-0.2
+0.1
-0.1
N.D.
stress
R2A with Zinc 0.1 mM
-0.6
-0.2
+0.0
-0.2
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.1
-0.1
+0.0
+0.2
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-1.0
-0.2
+0.1
+0.1
N.D.
carbon source
pyruvate (C)
-0.6
-0.4
+0.1
-0.1
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.2
+0.4
-0.2
+0.0
N.D.
lb
LB
-0.5
-0.6
+0.4
-0.1
N.D.
carbon source
Valeric (C)
-0.8
+0.0
-0.0
-0.2
N.D.
carbon source
L-Asparagine (C)
-0.7
-0.2
+0.0
+0.0
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-0.5
-0.4
+0.1
+0.0
N.D.
carbon source
L-Lactate (C)
-0.7
-0.2
-0.1
+0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.8
-0.3
+0.1
+0.3
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.8
+0.0
+0.0
+0.1
N.D.
carbon source
L-Alanine (C)
-0.7
+0.2
-0.0
+0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
-0.3
+0.3
+0.1
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.7
+0.5
-0.3
+0.1
N.D.
nitrogen source
D-Alanine (N)
-0.6
+0.0
+0.3
+0.1
N.D.
carbon source
Heptanoic (C)
-0.6
+0.4
+0.2
-0.1
N.D.
stress
R2A with Bacitracin 0.5 mg/ml
-0.7
+0.4
+0.1
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.4
+0.5
+0.1
+0.1
N.D.
carbon source
L-Leucine (C)
+0.5
+0.3
+0.0
-0.1
N.D.
carbon source
L-Tryptophan (C)
+0.7
+0.2
-0.2
+0.0
N.D.
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