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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11360 and RR42_RS11365 are separated by 153 nucleotides
RR42_RS11365 and RR42_RS11370 are separated by 148 nucleotides
RR42_RS11370 and RR42_RS11375 are separated by 244 nucleotides
RR42_RS11375 and RR42_RS11380 are separated by 113 nucleotides
RR42_RS11360: RR42_RS11360 - aldehyde dehydrogenase, at 2,432,098 to 2,433,522
_RS11360
RR42_RS11365: RR42_RS11365 - LysR family transcriptional regulator, at 2,433,676 to 2,434,596
_RS11365
RR42_RS11370: RR42_RS11370 - ABC transporter ATP-binding protein, at 2,434,745 to 2,436,355
_RS11370
RR42_RS11375: RR42_RS11375 - peptidase S66, at 2,436,600 to 2,437,574
_RS11375
RR42_RS11380: RR42_RS11380 - hypothetical protein, at 2,437,688 to 2,438,197
_RS11380
Group
Condition
RR42
_RS11360
RR42
_RS11365
RR42
_RS11370
RR42
_RS11375
RR42
_RS11380
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.3
+0.2
-1.3
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.3
-1.1
N.D.
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
+0.1
-1.2
N.D.
N.D.
nitrogen source
nitrite (N)
-0.2
-0.1
-0.6
N.D.
N.D.
nitrogen source
L-Citrulline (N)
-0.2
-0.5
-0.1
N.D.
N.D.
nitrogen source
L-Leucine (N)
-0.2
-0.6
-0.0
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.2
-0.2
-0.4
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.2
+0.5
-1.1
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.1
-0.6
+0.1
N.D.
N.D.
carbon source
L-Alanine (C)
-0.4
+0.2
-0.3
N.D.
N.D.
carbon source
L-Phenylalanine (C)
-0.2
-0.5
+0.2
N.D.
N.D.
carbon source
L-Leucine (C)
-0.3
-0.4
+0.3
N.D.
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.5
-0.7
N.D.
N.D.
nitrogen source
L-Tryptophan (N)
-0.4
-0.2
+0.4
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.0
+0.8
-0.7
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.1
+0.5
-0.4
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.4
-0.5
N.D.
N.D.
stress
R2A with nitrate 200 mM
+0.4
-0.5
+0.3
N.D.
N.D.
carbon source
Suberic (C)
-0.3
+0.3
+0.3
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+0.5
+0.3
N.D.
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
-0.3
+0.7
N.D.
N.D.
nitrogen source
L-Valine (N)
-0.2
-0.0
+0.7
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
+0.2
+0.6
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
+0.5
+0.1
N.D.
N.D.
carbon source
Octanoic (C)
+0.2
+0.4
+0.5
N.D.
N.D.
carbon source
adipate (C)
+0.0
+0.6
+0.6
N.D.
N.D.
carbon source
adipate (C)
+0.2
+0.9
+0.6
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
-0.2
+2.1
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+0.1
+1.9
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
+0.4
+3.0
N.D.
N.D.
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