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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS11175 and RR42_RS11180 are separated by 4 nucleotides
RR42_RS11180 and RR42_RS11185 are separated by 62 nucleotides
RR42_RS11185 and RR42_RS11190 are separated by 144 nucleotides
RR42_RS11190 and RR42_RS11195 are separated by 33 nucleotides
RR42_RS11175: RR42_RS11175 - BolA family transcriptional regulator, at 2,387,476 to 2,387,790
_RS11175
RR42_RS11180: RR42_RS11180 - peptidylprolyl isomerase, at 2,387,795 to 2,388,589
_RS11180
RR42_RS11185: RR42_RS11185 - TetR family transcriptional regulator, at 2,388,652 to 2,389,299
_RS11185
RR42_RS11190: RR42_RS11190 - acyl-CoA dehydrogenase, at 2,389,444 to 2,391,066
_RS11190
RR42_RS11195: RR42_RS11195 - phosphohydrolase, at 2,391,100 to 2,392,311
_RS11195
Group
Condition
RR42
_RS11175
RR42
_RS11180
RR42
_RS11185
RR42
_RS11190
RR42
_RS11195
stress
R2A with copper (II) chloride 0.25 mM
+0.2
-3.5
+0.0
-0.0
+0.1
nitrogen source
Glycine (N)
-0.2
-1.6
-0.1
-0.1
-0.0
stress
R2A with nitrate 150 mM
-0.2
-1.2
-0.1
-0.1
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
-1.7
+0.1
-0.0
+0.1
carbon source
Pimelic (C)
-0.1
-1.6
-0.1
+0.0
+0.0
carbon source
Pimelic (C)
-0.5
-1.1
-0.1
+0.0
+0.0
carbon source
Valeric (C)
-1.0
-0.4
-0.2
+0.0
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.3
-1.4
+0.2
-0.0
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-1.2
-0.0
-0.1
-0.2
carbon source
succinate (C)
-0.7
-0.4
-0.2
-0.0
-0.1
carbon source
Suberic (C)
-0.6
-0.2
-0.1
-0.3
-0.1
stress
R2A with Chlorite 4 mM
-0.6
-0.6
-0.0
+0.0
-0.0
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-0.8
-0.1
-0.1
+0.1
carbon source
Heptanoic (C)
-0.3
-0.5
-0.3
+0.1
-0.1
stress
R2A with Cobalt chloride 0.3 mM
-0.6
-0.9
+0.3
+0.1
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.9
+0.1
-0.0
-0.0
carbon source
L-Lactate (C)
-0.3
-0.7
-0.1
-0.1
+0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.1
-1.5
+0.1
+0.1
+0.2
carbon source
a-Ketoglutaric (C)
+0.0
-0.9
+0.1
+0.1
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
-1.1
+0.2
-0.1
+0.1
lb
LB
-0.6
-0.8
+0.4
+0.3
+0.2
carbon source
adipate (C)
+0.4
-0.4
-0.4
-0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+0.5
-0.2
-0.0
-0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.6
+1.0
-0.2
+0.2
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.7
-1.2
+0.1
+0.2
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
+0.7
+0.2
-0.2
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+1.1
+0.3
-0.0
-0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.9
-0.4
+0.1
+0.4
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
+0.8
+0.2
+0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.0
+1.0
+0.3
-0.0
+0.1
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