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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10945 and RR42_RS10950 are separated by 19 nucleotides
RR42_RS10950 and RR42_RS10955 are separated by 209 nucleotides
RR42_RS10955 and RR42_RS10960 are separated by 41 nucleotides
RR42_RS10960 and RR42_RS10965 are separated by 11 nucleotides
RR42_RS10945: RR42_RS10945 - MFS transporter, at 2,338,565 to 2,339,650
_RS10945
RR42_RS10950: RR42_RS10950 - GCN5 family acetyltransferase, at 2,339,670 to 2,340,095
_RS10950
RR42_RS10955: RR42_RS10955 - GntR family transcriptional regulator, at 2,340,305 to 2,341,057
_RS10955
RR42_RS10960: RR42_RS10960 - 3-hydroxyisobutyrate dehydrogenase, at 2,341,099 to 2,341,995
_RS10960
RR42_RS10965: RR42_RS10965 - membrane protein, at 2,342,007 to 2,343,311
_RS10965
Group
Condition
RR42
_RS10945
RR42
_RS10950
RR42
_RS10955
RR42
_RS10960
RR42
_RS10965
nitrogen source
Glucuronamide (N)
-0.3
-0.6
-0.3
-0.6
-0.6
nitrogen source
casaminos (N)
-0.4
-0.4
-0.6
-0.3
-0.4
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.4
-0.4
-0.4
-0.4
-0.4
r2a
R2A
-0.3
-0.6
-0.2
-0.2
-0.5
nitrogen source
L-Glutamine (N)
+0.2
-0.5
-0.2
-0.7
-0.4
temperature
R2A 23C
-0.5
-0.2
-0.5
-0.3
-0.1
nitrogen source
L-Serine (N)
-0.5
+0.6
-0.3
-0.8
-0.5
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+0.1
-0.1
-0.5
-0.7
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.2
-0.1
-0.4
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
-0.6
+0.0
-0.0
-0.2
carbon source
L-Malic (C)
+0.1
-0.4
-0.1
-0.2
-0.5
nitrogen source
L-Valine (N)
+0.2
-0.2
-0.1
-0.2
-0.6
temperature
R2A 23C
-0.6
+0.2
-0.4
+0.1
-0.1
carbon source
Valeric (C)
+0.0
-0.9
-0.1
+0.2
+0.1
carbon source
D-Fructose (C)
-0.1
+0.0
-0.3
+0.3
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-0.6
+0.3
-0.5
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.7
-0.4
+0.1
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
+0.5
+0.2
-0.3
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.6
+0.1
+0.5
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-0.3
-0.1
+0.3
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-0.5
+0.4
+0.4
+0.1
nitrogen source
L-Phenylalanine (N)
+0.0
+0.6
-0.0
-0.5
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
+0.7
+0.2
+0.2
-0.4
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+1.0
+0.1
-0.0
-0.3
carbon source
Dodecandioic (C)
+0.2
+0.4
-0.2
-0.0
+0.5
stress
R2A with Nickel (II) chloride 0.25 mM
+0.2
+0.1
+0.4
+0.5
-0.1
carbon source
Azelaic (C)
+0.0
+0.8
+0.2
+0.2
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.6
+0.3
+0.1
+0.4
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
+0.6
+0.3
+0.3
+0.2
lb
LB
+0.4
+1.0
+0.2
+0.4
+0.3
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