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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10850 and RR42_RS10855 are separated by 276 nucleotides
RR42_RS10855 and RR42_RS10860 are separated by 35 nucleotides
RR42_RS10860 and RR42_RS10865 are separated by 140 nucleotides
RR42_RS10865 and RR42_RS10870 are separated by 149 nucleotides
RR42_RS10850: RR42_RS10850 - hypothetical protein, at 2,319,715 to 2,323,344
_RS10850
RR42_RS10855: RR42_RS10855 - diguanylate phosphodiesterase, at 2,323,621 to 2,324,838
_RS10855
RR42_RS10860: RR42_RS10860 - GntR family transcriptional regulator, at 2,324,874 to 2,325,287
_RS10860
RR42_RS10865: RR42_RS10865 - LysR family transcriptional regulator, at 2,325,428 to 2,326,384
_RS10865
RR42_RS10870: RR42_RS10870 - FMN-dependent NADH-azoreductase, at 2,326,534 to 2,327,136
_RS10870
Group
Condition
RR42
_RS10850
RR42
_RS10855
RR42
_RS10860
RR42
_RS10865
RR42
_RS10870
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-3.0
-0.4
-0.6
-0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.6
-1.4
-0.1
-0.4
-0.6
stress
R2A with Zinc 0.1 mM
-0.1
-1.8
+0.0
-0.4
-0.4
nitrogen source
L-Isoleucine (N)
-0.1
-2.1
+0.0
-0.0
-0.2
nitrogen source
L-Glutamine (N)
-0.4
-0.6
-0.3
-0.5
-0.5
nitrogen source
Glucuronamide (N)
-0.6
-0.5
-0.3
-0.3
-0.5
carbon source
Valeric (C)
-0.1
-1.6
-0.2
-0.1
-0.1
nitrogen source
L-Serine (N)
-0.7
-0.7
-0.3
-0.2
-0.2
stress
R2A with nitrate 200 mM
-0.9
-0.2
-0.2
-0.3
-0.4
nitrogen source
casaminos (N)
-0.3
-0.3
-0.3
-0.1
-0.9
r2a
R2A
-0.3
-0.5
-0.2
-0.4
-0.4
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.1
-0.6
-0.5
-0.2
-0.5
carbon source
Valeric (C)
-0.0
-1.3
+0.2
-0.4
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
-1.4
+0.1
-0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-1.2
+0.1
-0.5
+0.2
carbon source
Heptanoic (C)
+0.0
-1.9
+0.1
+0.1
+0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
-1.4
+0.2
+0.1
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.4
+0.8
-0.4
-1.0
-0.1
lb
LB
-1.0
-0.4
+0.1
-0.1
+0.4
stress
R2A with Cobalt chloride 0.3 mM
-0.5
-1.1
-0.1
+0.3
+0.5
nitrogen source
L-Citrulline (N)
-0.3
-1.1
-0.1
+0.4
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.9
+0.2
-0.4
+0.4
carbon source
Protocatechuic Acid (C)
-0.2
-0.8
+0.1
-0.1
+0.7
carbon source
propionate (C)
-0.3
+1.0
-0.1
-0.3
-0.2
carbon source
L-Histidine (C)
-0.2
+1.2
-0.1
-0.0
-0.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
+1.2
-0.1
-0.2
-0.1
carbon source
Azelaic (C)
+0.0
+1.1
+0.4
-0.1
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
+1.3
-0.0
+0.3
+0.1
carbon source
succinate (C)
-0.1
+1.4
+0.2
-0.0
+0.3
carbon source
butyrate (C)
+0.1
+1.2
+0.4
+0.2
-0.2
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