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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10610 and RR42_RS10615 are separated by 47 nucleotides
RR42_RS10615 and RR42_RS10620 are separated by 9 nucleotides
RR42_RS10620 and RR42_RS10625 are separated by 42 nucleotides
RR42_RS10625 and RR42_RS10630 are separated by 29 nucleotides
RR42_RS10610: RR42_RS10610 - hypothetical protein, at 2,266,801 to 2,267,850
_RS10610
RR42_RS10615: RR42_RS10615 - 2-hydroxyacid dehydrogenase, at 2,267,898 to 2,268,923
_RS10615
RR42_RS10620: RR42_RS10620 - amidohydrolase, at 2,268,933 to 2,269,763
_RS10620
RR42_RS10625: RR42_RS10625 - glucarate dehydratase, at 2,269,806 to 2,271,164
_RS10625
RR42_RS10630: RR42_RS10630 - hypothetical protein, at 2,271,194 to 2,271,544
_RS10630
Group
Condition
RR42
_RS10610
RR42
_RS10615
RR42
_RS10620
RR42
_RS10625
RR42
_RS10630
carbon source
adipate (C)
-1.3
-0.4
-0.2
N.D.
N.D.
carbon source
Pimelic (C)
-1.2
-0.2
+0.1
N.D.
N.D.
carbon source
L-Tryptophan (C)
+0.0
-0.5
-0.5
N.D.
N.D.
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.0
-0.9
-0.1
N.D.
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.3
-0.4
-0.8
N.D.
N.D.
carbon source
Pimelic (C)
-1.1
-0.1
+0.3
N.D.
N.D.
carbon source
adipate (C)
-1.3
+0.3
+0.2
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-0.2
-0.5
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.5
-0.2
-0.1
N.D.
N.D.
stress
R2A with Chlorite 4 mM
+0.1
-0.4
-0.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
+0.4
-0.6
N.D.
N.D.
carbon source
propionate (C)
+0.1
-0.6
-0.1
N.D.
N.D.
carbon source
L-Glutamine (C)
-0.6
-0.0
+0.3
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.5
-0.9
+0.1
N.D.
N.D.
carbon source
L-Phenylalanine (C)
+0.0
+0.3
-0.5
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.4
-0.1
N.D.
N.D.
nitrogen source
L-Tryptophan (N)
-0.2
-0.4
+0.5
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
-0.6
+0.1
N.D.
N.D.
carbon source
Ethanol (C)
-0.3
+0.4
+0.1
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-0.3
+0.7
-0.2
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+0.4
+0.3
-0.3
N.D.
N.D.
carbon source
Valeric (C)
+0.3
-0.2
+0.4
N.D.
N.D.
temperature
R2A 37C
+0.1
+0.5
-0.2
N.D.
N.D.
carbon source
Disodium Glutarate (C)
-0.1
+0.0
+0.7
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.1
+0.8
-0.1
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.6
-0.2
+0.5
N.D.
N.D.
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.3
+0.3
+0.3
N.D.
N.D.
carbon source
Hexanoic (C)
+0.1
+0.5
+0.3
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.4
+0.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.8
+0.7
N.D.
N.D.
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