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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10330 and RR42_RS10335 overlap by 1 nucleotides
RR42_RS10335 and RR42_RS10340 are separated by 112 nucleotides
RR42_RS10340 and RR42_RS10345 are separated by 168 nucleotides
RR42_RS10345 and RR42_RS10350 are separated by 180 nucleotides
RR42_RS10330: RR42_RS10330 - hydantoinase, at 2,210,412 to 2,212,199
_RS10330
RR42_RS10335: RR42_RS10335 - hypothetical protein, at 2,212,199 to 2,212,678
_RS10335
RR42_RS10340: RR42_RS10340 - GntR family transcriptional regulator, at 2,212,791 to 2,213,579
_RS10340
RR42_RS10345: RR42_RS10345 - amino acid dehydrogenase, at 2,213,748 to 2,214,818
_RS10345
RR42_RS10350: RR42_RS10350 - indolepyruvate ferredoxin oxidoreductase, at 2,214,999 to 2,218,484
_RS10350
Group
Condition
RR42
_RS10330
RR42
_RS10335
RR42
_RS10340
RR42
_RS10345
RR42
_RS10350
nitrogen source
L-Isoleucine (N)
+0.0
N.D.
N.D.
-2.8
-1.2
nitrogen source
L-Isoleucine (N)
+0.2
N.D.
N.D.
-2.0
-1.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
N.D.
N.D.
-0.2
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.3
N.D.
N.D.
-0.2
-0.2
carbon source
L-Alanine (C)
-0.2
N.D.
N.D.
-0.4
+0.0
carbon source
D,L-Lactate (C)
-0.1
N.D.
N.D.
-0.5
+0.1
carbon source
L-Glutamine (C)
-0.2
N.D.
N.D.
-0.3
+0.1
nitrogen source
L-Asparagine (N)
-0.2
N.D.
N.D.
-0.3
+0.1
carbon source
L-Alanine (C)
-0.3
N.D.
N.D.
-0.2
+0.2
carbon source
butyrate (C)
-0.2
N.D.
N.D.
-0.3
+0.2
carbon source
L-Tryptophan (C)
-0.1
N.D.
N.D.
-0.4
+0.2
carbon source
D-Lactate (C)
-0.1
N.D.
N.D.
-0.4
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
N.D.
N.D.
-0.2
-0.2
nitrogen source
L-Glutamine (N)
+0.1
N.D.
N.D.
-0.4
+0.1
r2a
R2A
-0.2
N.D.
N.D.
+0.3
-0.1
carbon source
L-Proline (C)
-0.0
N.D.
N.D.
-0.4
+0.4
r2a
R2A
+0.2
N.D.
N.D.
-0.4
+0.2
nitrogen source
L-Valine (N)
-0.1
N.D.
N.D.
-0.3
+0.4
nitrogen source
L-Leucine (N)
-0.2
N.D.
N.D.
-0.3
+0.5
carbon source
Ethanol (C)
+0.0
N.D.
N.D.
-0.3
+0.3
carbon source
L-Malic (C)
-0.2
N.D.
N.D.
-0.1
+0.4
carbon source
L-Histidine (C)
+0.0
N.D.
N.D.
-0.3
+0.3
carbon source
Heptanoic (C)
+0.3
N.D.
N.D.
+0.2
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.2
N.D.
N.D.
-0.1
+0.4
carbon source
Octanoic (C)
-0.1
N.D.
N.D.
+0.5
+0.1
carbon source
Octanoic (C)
+0.3
N.D.
N.D.
+0.3
+0.0
carbon source
Pimelic (C)
+0.2
N.D.
N.D.
+0.2
+0.2
carbon source
L-Asparagine (C)
+0.2
N.D.
N.D.
+0.1
+0.4
nitrogen source
L-Valine (N)
+0.4
N.D.
N.D.
+0.1
+0.2
carbon source
Protocatechuic Acid (C)
+0.2
N.D.
N.D.
+0.1
+0.5
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