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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10285 and RR42_RS10290 are separated by 25 nucleotides
RR42_RS10290 and RR42_RS10295 are separated by 31 nucleotides
RR42_RS10295 and RR42_RS10310 are separated by 1467 nucleotides
RR42_RS10310 and RR42_RS10315 are separated by 2 nucleotides
RR42_RS10285: RR42_RS10285 - hypothetical protein, at 2,202,241 to 2,202,804
_RS10285
RR42_RS10290: RR42_RS10290 - hypothetical protein, at 2,202,830 to 2,203,444
_RS10290
RR42_RS10295: RR42_RS10295 - hypothetical protein, at 2,203,476 to 2,204,045
_RS10295
RR42_RS10310: RR42_RS10310 - NADPH:quinone reductase, at 2,205,513 to 2,206,406
_RS10310
RR42_RS10315: RR42_RS10315 - short-chain dehydrogenase, at 2,206,409 to 2,207,170
_RS10315
Group
Condition
RR42
_RS10285
RR42
_RS10290
RR42
_RS10295
RR42
_RS10310
RR42
_RS10315
carbon source
Suberic (C)
+0.1
-0.8
+0.0
-1.4
-0.0
carbon source
Protocatechuic Acid (C)
-0.2
-1.2
+0.1
-0.8
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.8
-0.4
-0.6
-0.4
carbon source
Heptanoic (C)
+0.1
-0.7
-0.1
-1.2
+0.2
carbon source
Valeric (C)
-0.4
-0.6
-0.1
-0.7
+0.0
carbon source
Azelaic (C)
+0.1
-0.8
+0.2
-1.1
-0.0
carbon source
Octanoic (C)
-0.1
-0.6
+0.3
-1.2
+0.0
nitrogen source
L-Serine (N)
+0.2
-0.4
+0.0
-1.0
-0.2
nitrogen source
L-Valine (N)
+0.2
+0.2
-0.2
-1.3
-0.2
nitrogen source
L-Citrulline (N)
+0.2
-0.1
+0.1
-1.4
+0.0
stress
R2A with Nickel (II) chloride 0.25 mM
+0.4
-0.4
-0.1
-0.8
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.4
-0.1
-0.7
-0.4
nitrogen source
Glycine (N)
+0.1
-0.1
+0.1
-1.4
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
-0.2
-0.7
+0.6
-0.4
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-0.2
-0.3
-0.9
+0.3
carbon source
adipate (C)
-0.2
-1.7
+0.3
+0.2
+0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.3
+0.2
-0.1
-0.4
-0.8
carbon source
propionate (C)
+0.5
-0.3
-0.1
-0.9
+0.2
r2a
R2A
+0.2
-1.0
+0.0
-0.2
+0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.3
-0.3
+0.2
+0.5
-0.6
carbon source
L-Histidine (C)
+0.0
+0.5
-0.3
-0.9
+0.2
carbon source
D-Lactate (C)
+0.3
+0.4
-0.5
-0.8
+0.1
carbon source
Protocatechuic Acid (C)
-0.1
-0.3
+0.5
-0.9
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
+0.7
-0.3
-0.6
+0.1
carbon source
D,L-Lactate (C)
+0.1
-0.3
-0.3
+0.9
-0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
-0.6
+0.2
+0.5
+0.3
stress
R2A with Chloride 300 mM
-0.3
-0.6
+0.1
+0.4
+0.8
lb
LB
-0.2
+0.9
+0.1
-0.4
+0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+1.2
+0.2
-0.0
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+1.1
+0.1
+0.0
+0.5
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