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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10245 and RR42_RS10250 are separated by 39 nucleotides
RR42_RS10250 and RR42_RS10255 are separated by 59 nucleotides
RR42_RS10255 and RR42_RS10260 are separated by 31 nucleotides
RR42_RS10260 and RR42_RS10265 are separated by 28 nucleotides
RR42_RS10245: RR42_RS10245 - dehydratase, at 2,193,968 to 2,194,426
_RS10245
RR42_RS10250: RR42_RS10250 - enoyl-CoA hydratase, at 2,194,466 to 2,195,254
_RS10250
RR42_RS10255: RR42_RS10255 - gluconate 5-dehydrogenase, at 2,195,314 to 2,196,096
_RS10255
RR42_RS10260: RR42_RS10260 - acetyl-CoA acetyltransferase, at 2,196,128 to 2,197,303
_RS10260
RR42_RS10265: RR42_RS10265 - 3-hydroxyacyl-CoA dehydrogenase, at 2,197,332 to 2,199,410
_RS10265
Group
Condition
RR42
_RS10245
RR42
_RS10250
RR42
_RS10255
RR42
_RS10260
RR42
_RS10265
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.7
+0.5
-0.2
-0.6
-0.2
carbon source
Dodecandioic (C)
-0.8
+0.0
-0.4
-0.6
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.4
-0.7
+0.2
-1.0
-0.1
carbon source
Trisodium citrate (C)
-1.0
-0.5
+0.1
-0.3
-0.2
carbon source
Disodium Glutarate (C)
-0.5
+0.1
-0.4
-1.0
-0.0
carbon source
L-Leucine (C)
-1.2
-0.1
-0.1
-0.4
+0.0
carbon source
Octanoic (C)
-0.7
-0.6
+0.1
-0.5
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
-0.4
-0.3
-0.3
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.5
-0.2
+0.1
-1.0
+0.2
carbon source
L-Threonine (C)
-0.3
-0.9
+0.2
-0.3
-0.1
nitrogen source
nitrite (N)
-0.3
-0.2
-0.3
-0.7
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.2
+0.1
-0.8
-0.6
carbon source
Suberic (C)
-0.5
-0.3
+0.1
-0.5
-0.2
carbon source
Azelaic (C)
+0.2
-0.9
-0.2
-0.2
-0.1
nitrogen source
L-Citrulline (N)
-0.6
+0.2
+0.0
-0.6
-0.1
carbon source
D-Lactate (C)
-0.0
-0.5
+0.3
-0.7
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-1.3
+0.3
+0.0
-0.1
-0.0
carbon source
Protocatechuic Acid (C)
-0.4
+0.0
+0.1
-0.9
+0.2
carbon source
Valeric (C)
+0.3
+0.0
-0.4
-0.6
-0.2
carbon source
succinate (C)
-0.6
-0.3
-0.0
+0.3
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.6
+0.3
-0.2
-0.3
-0.1
carbon source
L-Phenylalanine (C)
-0.3
-0.3
+0.1
-0.7
+0.3
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
-0.6
+0.0
-0.4
-0.1
stress
R2A with Zinc 0.1 mM
-0.2
-0.5
+0.5
-0.3
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.4
+0.3
-0.5
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.5
-0.4
-0.4
+0.3
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
+0.6
+0.0
+0.2
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.8
+0.4
-0.2
-0.5
-0.1
lb
LB
-1.0
+0.6
+0.1
+0.4
+0.3
stress
R2A with Lomefloxacin 0.001 mM
+0.4
+0.6
-0.0
+0.6
+0.4
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