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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10210 and RR42_RS10215 are separated by 474 nucleotides
RR42_RS10215 and RR42_RS10220 are separated by 170 nucleotides
RR42_RS10220 and RR42_RS10225 are separated by 18 nucleotides
RR42_RS10225 and RR42_RS10230 are separated by 36 nucleotides
RR42_RS10210: RR42_RS10210 - alcohol dehydrogenase, at 2,184,688 to 2,185,671
_RS10210
RR42_RS10215: RR42_RS10215 - N-ethylmaleimide reductase, at 2,186,146 to 2,187,255
_RS10215
RR42_RS10220: RR42_RS10220 - hypothetical protein, at 2,187,426 to 2,187,908
_RS10220
RR42_RS10225: RR42_RS10225 - nitronate monooxygenase, at 2,187,927 to 2,188,907
_RS10225
RR42_RS10230: RR42_RS10230 - hypothetical protein, at 2,188,944 to 2,190,755
_RS10230
Group
Condition
RR42
_RS10210
RR42
_RS10215
RR42
_RS10220
RR42
_RS10225
RR42
_RS10230
carbon source
Valeric (C)
-0.2
-0.2
-1.0
-0.3
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.1
-0.4
-1.1
-0.2
nitrogen source
casaminos (N)
-0.2
-0.1
-0.0
-0.8
-0.3
lb
LB
+0.1
+0.2
+0.2
-1.0
-0.7
carbon source
Trisodium citrate (C)
-0.3
-0.0
-0.7
-0.0
-0.3
carbon source
Octanoic (C)
-0.2
-0.3
-0.6
-0.1
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.1
-0.4
-0.4
-0.3
-0.2
carbon source
Hexanoic (C)
-0.2
-0.0
-0.5
-0.5
+0.0
carbon source
adipate (C)
-0.2
-0.5
-0.0
-0.2
-0.2
carbon source
Disodium Glutarate (C)
-0.3
-0.2
-0.5
-0.0
+0.0
nitrogen source
L-Threonine (N)
-0.1
+0.1
-0.6
-0.2
-0.2
nitrogen source
L-Isoleucine (N)
-0.2
+0.1
-0.2
-0.4
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.1
-0.1
-0.2
-0.7
carbon source
Valeric (C)
-0.3
-0.3
+0.2
-0.5
-0.1
carbon source
D,L-Lactate (C)
-0.3
+0.1
-0.6
+0.2
-0.3
carbon source
L-Phenylalanine (C)
+0.0
+0.0
+0.0
-0.8
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+0.1
+0.1
-0.7
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.2
-0.6
-0.4
+0.1
stress
R2A with Sisomicin 0.035 mg/ml
-0.3
-0.2
-0.1
+0.3
-0.3
nitrogen source
L-Glutamine (N)
-0.4
+0.1
+0.4
-0.4
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
-0.3
+0.4
-0.3
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.2
-0.4
-0.3
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
+0.4
+0.1
-0.7
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.4
+0.5
+0.2
-0.4
stress
R2A with copper (II) chloride 0.25 mM
+0.1
-0.4
+0.3
+0.2
-0.3
carbon source
Protocatechuic Acid (C)
-0.2
-0.3
-0.1
+0.3
+0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.2
+0.1
+0.2
+0.3
-0.7
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
+0.1
-0.3
+0.5
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
+0.0
+0.4
+0.4
-0.4
stress
R2A with Lomefloxacin 0.001 mM
+0.7
+0.4
+0.7
+0.8
-0.1
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