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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10185 and RR42_RS10190 are separated by 278 nucleotides
RR42_RS10190 and RR42_RS10195 are separated by 2 nucleotides
RR42_RS10195 and RR42_RS10210 are separated by 1328 nucleotides
RR42_RS10210 and RR42_RS10215 are separated by 474 nucleotides
RR42_RS10185: RR42_RS10185 - hypothetical protein, at 2,180,296 to 2,181,618
_RS10185
RR42_RS10190: RR42_RS10190 - LuxR family transcriptional regulator, at 2,181,897 to 2,182,541
_RS10190
RR42_RS10195: RR42_RS10195 - hypothetical protein, at 2,182,544 to 2,183,359
_RS10195
RR42_RS10210: RR42_RS10210 - alcohol dehydrogenase, at 2,184,688 to 2,185,671
_RS10210
RR42_RS10215: RR42_RS10215 - N-ethylmaleimide reductase, at 2,186,146 to 2,187,255
_RS10215
Group
Condition
RR42
_RS10185
RR42
_RS10190
RR42
_RS10195
RR42
_RS10210
RR42
_RS10215
carbon source
adipate (C)
-0.1
-0.5
-0.8
-0.2
-0.5
carbon source
Protocatechuic Acid (C)
-0.1
-0.8
-0.1
-0.2
-0.3
carbon source
Suberic (C)
-0.2
-0.0
-0.7
-0.4
-0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.0
-0.1
-0.7
-0.1
-0.4
carbon source
Heptanoic (C)
-0.0
-0.1
-0.2
-0.8
-0.1
nitrogen source
L-Valine (N)
+0.2
-0.1
-1.0
-0.0
-0.1
carbon source
Valeric (C)
-0.0
-0.3
+0.3
-0.2
-0.2
nitrogen source
L-Citrulline (N)
-0.2
-0.2
+0.4
-0.3
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.0
-0.2
+0.5
-0.3
-0.2
carbon source
adipate (C)
-0.0
-0.5
+0.7
-0.2
-0.2
stress
R2A with copper (II) chloride 0.25 mM
-0.2
+0.1
+0.4
+0.1
-0.4
carbon source
Octanoic (C)
-0.1
+0.1
+0.5
-0.4
-0.1
nitrogen source
L-Serine (N)
+0.0
-0.3
+0.7
-0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.1
-0.5
+0.3
+0.1
temperature
R2A 23C
+0.1
+0.0
+0.7
-0.4
-0.2
carbon source
L-Tryptophan (C)
+0.3
+0.1
+0.4
-0.4
-0.0
stress
R2A with nitrate 200 mM
-0.1
+0.1
+0.6
-0.1
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
-0.3
+0.7
+0.0
+0.0
stress
R2A with A22 0.01 mg/ml
-0.2
-0.1
+0.8
+0.1
-0.1
stress
R2A with Cobalt chloride 0.3 mM
-0.2
-0.2
+1.0
-0.1
+0.1
nitrogen source
L-Phenylalanine (N)
+0.1
+0.2
+0.4
-0.2
+0.3
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+0.3
-0.5
+0.7
+0.4
carbon source
L-Lactate (C)
-0.1
+0.3
+0.7
+0.1
-0.1
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.1
+0.2
+0.4
-0.2
+0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
+0.2
+0.9
-0.0
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
+0.2
+0.8
+0.1
-0.2
carbon source
Hexanoic (C)
+0.1
+0.1
+0.8
-0.1
+0.1
nitrogen source
Glycine (N)
+0.1
+0.3
+0.5
-0.1
+0.1
carbon source
L-Asparagine (C)
+0.1
+0.2
+0.6
-0.0
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
+0.1
+0.9
+0.2
-0.1
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